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Review

The Fate of Nitrogen from Soil to Plants: Influence of Agricultural Practices in Modern Agriculture

by
Maria Giordano
1,*,
Spyridon A. Petropoulos
2 and
Youssef Rouphael
1
1
Department of Agricultural Sciences, University of Naples Federico II, Via Universita 100, 80055 Portici, Italy
2
Department of Agriculture Crop Production and Rural Environment, University of Thessaly, Fytokou Street, 38446 Nea Ionia, Magnissia, Greece
*
Author to whom correspondence should be addressed.
Submission received: 4 August 2021 / Revised: 25 September 2021 / Accepted: 27 September 2021 / Published: 29 September 2021
(This article belongs to the Section Crop Production)

Abstract

:
Nitrogen is an element present on Earth in different forms, such as gaseous in the air, dissolved in water, immobilized in the soil, as well as biologically bound in all living organisms. The transition from one form to another constitutes the nitrogen cycle. Current agricultural systems rely on nitrogen fertilizers, which represent the reactive or biologically available nitrogen in soil. The excessive presence of reactive nitrogen in the environment has become a threat to soil, water, and air. The increasing demands for food in the world are associated with significant increase in nitrogen fertilizers inputs which threatens the environment and living organisms. The quantities of nitrogen used per capita in developed countries exceed those in developing countries. However, developed countries are regulated by restrictions of fertilizers inputs in agriculture, whereas such regulations do not exist in most of the developing countries. The need to resort to alternative and eco-sustainable strategies to mitigate the pollution related to human activities, is increasingly evident. This review aims to highlight the fate of nitrogen through the main agricultural practices in modern agriculture. Special attention was given to rocket (Eruca sativa) which is considered a nitrate hyper-accumulator and was used as a case study in the present review. Finally, some eco-sustainable solutions, useful for mitigating or preventing the excessive release of harmful forms of nitrogen into the environment, were also discussed.

1. Introduction

Modern agriculture is called upon to respond to the increasing demands for food in an ever-growing world population, which according to experts is expected to reach 9 billion people in 2050 [1,2]. To produce food in larger quantities, agriculture must continuously resort to fertilizers [3]. The use of nitrogen-based fertilizers is estimated in millions of tons (155 Mt) [4] and has allowed the increase in production of crops and food all over the world. In countries such as India, whose diet is supported almost exclusively by agricultural products [5], urea accounts for 80% of the fertilizers used in the farming sector. However, the continuous replenishment of organic and inorganic forms of nitrogen in soils has altered the natural cycle of this element over the past 50 years [2,5]. An excessive quantity of nitrogen fertilizers is supplied in the soil, because only about half of the applied quantity is available and is finally absorbed by crops [6]. The other half is dispersed in the environment in different forms [5,7]. Staple foods such as Brassica napus L., used for oil production in China are cultivated by using about 300 kg N ha−1, but actually plants take up only 30–50% of the total nitrogen supplied [8].
Nitrogen compounds, derived from fertilizers and which are harmful to environmental and human health, are nitrates, nitrogen oxides (N2O) and ammonia [5,9,10,11]. Strong releases of N2O from agricultural soils to the atmosphere were recorded in the first hours after fertilizers application [12]. However, there is no linear relationship between the amount of fertilizers and N2O, as soil and environmental characteristics can affect these emissions [5,11,13,14,15,16]. Moreover, rice crops and ruminant livestock farms release methane, while nitrous oxide (N2O), carbon dioxide (CO2), and methane (CH4) are gases related to greenhouse cultivation of crops. The increase of these gases in the atmosphere is translated into a change in natural phenomena, such as the alteration in the flow of monsoons, the higher frequency and intensity of hurricanes, the melting of glaciers, and rising sea levels [17]. Therefore, human activities through the agricultural practices, is highly participating in environmental pollution and the ongoing climate change.
The evaluation of nitrogen losses from the agricultural context to environment has been defined as nitrogen footprint [17,18,19,20]. It can refer to the use of fertilizers, the consumption of agricultural products, and the production of energy [17,18,19,20]. Countries that import or export agricultural products significantly affect nitrogen footprint. The correct assessment of nitrogen inputs and outputs in ecosystems could be useful to establish whether this ecosystem is directed towards nitrogen use efficiency (NUE) or negative use of nitrogen. Nitrogen footprint can also refer to food consumption around the world [21,22]. The consumption of nitrogen through food varies from 15 to 47 kg of nitrogen per capita per year. The reason for this difference lies above all in differences in consumption of proteins and the different nitrogen turnover throughout the world [19]. In this context, North America (39 kg per year)and some European countries (24–29 kg N per capita per year) show a higher nitrogen footprint, compared to Asia (2–11 kg N per capita per year) [2]. Moreover, the nitrogen footprint linked to the consumption of fossil energy is greater in America than in China, but China has higher values than Europe [2]. The nitrogen footprint can also vary according to the eating habits imposed by cultural and religious differences [23]. In India, where several different religions coexist, N footprint values of 10.7, 11.45, 11.47, 7.39 kg N per capita per year have been estimated, referring to the eating habits of Hinduists, Muslims, Christians, and Buddhists, respectively [23].
The purpose of this review was the assessment of nitrogen turnover within the environmental and agricultural context. Attention was given to rocket, which is a widespread vegetable worldwide, is consumed mainly as a salad, and which has been defined as a nitrate hyper-accumulator. Eco-sustainable mitigation strategies against the dispersion of harmful forms of nitrogen into the environment, were also discussed.

2. Nitrogen in the Soil: Origin and Destiny

2.1. Nitrogen Absorption through the Roots

Nitrogen makes up 78.09% of our atmosphere, where it is found in a non-reactive form (N2). In soils however, it is present in small quantities, but in very reactive forms (Nr) [2]. These forms can be inorganic and reduced, such as ammonia, and ammonium, and/or oxidized ones, such as nitric acid (HNO3), nitrous acid (HNO2), nitrate ion (NO3), nitrogen oxides (NOx), nitrous oxide (N2O), nitrogen pentoxide (N2O5), and peroxyacetyl nitrate (PAN) [5]. The organic forms of nitrogen in soil include amino acids, proteins, amines, urea, and other nitrogen containing organic molecules. Among these forms, ammonium and nitrate are the ones that are absorbed the fastest by plants [24]. An indispensable element required for the absorption of ammonium and nitrate is water. In nitrogen cycle (e.g., soil–plant–atmosphere), water allows the absorption of nitrogen and other nutrients through the roots, thus influencing plant growth [25]. The accumulation of nitrogen reserves within plants, or the remobilization of nitrogen from one plant part to another, occurs thanks to the water movement. This allows the plant to have nitrogen deposits without promptly resorting to absorption from the environment and results in energy savings and reduced nitrogen losses [24]. On the other hand, root hydraulic conductance and water uptake were found to be increased, following the replenishment of nitrate in the soil in Helianthus annuus cv. Holiday, Solanum lycopersicum, and Cucumis sativus [24]. Therefore, water use efficiency (WUE) and nitrogen use efficiency (NUE) are interrelated and may determine crop yield [24,26].
Deep roots may ensure the reduction in nitrogen leaching in the soil [24]. Nitrogen in turn affects root growth, as high concentrations of nitrates can suppress the growth of lateral roots [24]. On the other hand, under reduced nitrogen conditions, there is an increase in root hairs and root density in terms of length and thickness [27]. At present, the relationship between water and absorbed nitrogen is altered by the climate change which causes sudden and extreme rainfalls, so the development of cultivars with high WUE and NUE is increasingly difficult [24].

2.2. Activity of Microorganisms

Soils are rich in nitrogen thanks to the activity of nitrogen-fixing microorganisms, which create symbiotic relationships with some plant species. Biologically fixed nitrogen (BNF) is an important nitrogen source that guarantees more nitrogen than manures and chemical fertilizers [28,29]. The symbiosis between the genus Rhizobium and leguminous plants fixes a quantity of nitrogen within the range of 15–200 kg ha−1 [24]. Such associations are also effective in conditions of water stress or high temperatures [24]. Arbuscular mycorrhizal fungi are another group of microorganisms that are important for nutrients absorption and for improving plant tolerance to water stress [30,31]. The inoculation with these two types of microorganisms provides crops with a good supply of water and nitrogen [24]. Moreover, the correct combination of beneficial microorganisms can guarantee the success of crops, such as legumes, even under nutrient- and/or water-deficient environments [24]. From this point of view, nitrogen-fixing activity of these microorganisms could be an alternative to reduce the inputs of chemical fertilizers in agriculture.

2.3. Loss of Nitrogen from the Soil

The gaseous forms of nitrogen released due to human activities, are nitrous oxide (N2O), NOx (NO + NO2), and ammonia [5]. These gases are emitted either during the cultivation and harvesting of crops, or when fertilizers and pesticides are produced [5]. Nitrogen can leave agricultural systems through nitrate leaching or crop harvest [5].

2.3.1. Volatilization of Ammonia

The release of ammonia from soils has an impact on air, water, animal, and human health, particularly in areas where animal nutrition is intensified, and in countries where there is no regulation of fertilizers use, such as developing countries [2,32]. Ammonia can bind to acidic compounds (SO42− and NO3) and form an inorganic aerosol and acid rain [2]. The volatilization of ammonia is very rapid when fertilizers containing ammonium are applied, for example, ammonium nitrate, ammonium sulfate, and urea (NH4NO3, NH4SO4 and CH4N2O, respectively) [2]. This process is influenced by edaphic and climatic factors and in fact it is favored in soils with high pH, but also with acidic or neutral pH in the case of urea [2]. The hydrolyzed urea in soil solution increases the pH and determines the reduction of the ammonium ion into ammonia [33,34,35]. Ninety percent (%) of ammonia emissions (7.6 million kg ha−1) come from animal husbandry which derives from the hydrolysis of urea contained in urine and feces [36].
The increase of ammonia in the atmosphere from dairy manure and the total N fraction deposited in manure were elaborated with the use of δ15N isotopes in various laboratory studies [32]. These studies showed that ammonia was emitted into the air in large quantities in the early days of manure storage and subsequently a decline in volatilization was recorded. Chalk et al. [32] reported the measurements made over more than 30 years, which evaluated the accumulation of δ15N isotopes in six different areas in Yellowstone National Park where grazing from ungulate took place. The data showed that δ15N was present in urine in greater quantities than in soil (0–20 cm) and plants, and most nitrogen was found as NH3 emitted from soil. These results were confirmed by laboratory studies with plants and soil treated with ungulate urine containing δ15N, where δ15N accumulated in soils and plants treated with urine, compared to controls without urine. Furthermore, the various studies showed that NH3 volatilized from soil could be absorbed by plant shoots [32].
Enrichment with δ15N and subsequent release in the form of ammonia has been shown in composts of agricultural residues, such as corn silage and cattle manure compost [32,37]. The use of δ15N has also made it possible to record an increase in NH4+ and NO3 in manure composted with rice or sawdust. In these studies, it was shown that NH4+ is lost at the beginning of the composting process by volatilization of NH3 or with nitrification, and NO3 is subsequently lost through denitrification [32].

2.3.2. Emissions of N2O and Odd Oxides of Nitrogen

N2O emission into the air is considered as nitrogen loss from soil, which strongly contrasts the NUE. N2O activity as a greenhouse gas has been estimated to be 300 times greater than CO2 [5,17]. Furthermore, N2O reacts with oxygen forming nitric acid and reducing the amount of ozone in the stratosphere, contributing to the greenhouse effect [2]. The combustion of fuels from cars and industries also releases large quantities of N2O, so that the World Health Organization (WHO) has identified pulmonary and cardiovascular diseases in children and adults resulting from excessive or continuous exposure to this gas [38]. Large quantities of N2O have been recorded in ruminant farms, too [39,40,41]. N2O can be emitted from the soil both under aerobic conditions of nitrification and anaerobic conditions of denitrification [42,43]. The microbial producers of N2O are ammonia oxidizing archaea, ammonia oxidizing bacteria, ammonia oxidizing methanotrophs, fungal and denitrifying bacteria [32].
The use of δ15N-N2O isotopes was used to follow the path of N2O from the soil [32]. Some studies have shown that heavy rains increase the gas emissions from soil. It has been observed that both ammonia monooxygenase and bacterial nitrate reductase transcripts increase because of the production of N2O after heavy rains, demonstrating that both denitrifying and nitrifying microorganisms increase their activity for N2O production, with rain [32]. Nitrification is the oxidation process that converts ammonium into hydroxylamine (NH2OH), NOH, and NO2, while both NH2OH and NOH can produce N2O [44]. N2O can be formed through incomplete nitrification, called nitrifier denitrification [39], which is the reduction of NO2 to N2O, caused by denitrifying microorganisms in intermediate oxic–anoxic conditions. Denitrification is the anaerobic reduction of NO3 by denitrifying bacteria, with the formation of NO2, NO, N2O, and N2 gases. In the denitrification process, N2O originates from NO3 or NO [19]. N2O, produced through the denitrification of organic amendments, is much greater than that derived from nitrification or that released from fertilizing soils with mineral nitrogen or without nitrogen amendments [39,45,46]. The gases released from the soil after denitrification may differ depending on the amount of NO3, O2, carbon as the energy source, pH, and microbial community in the soil [47]. The gas spread in the soil is very important, and it is related to the structure and the anaerobic conditions of the soil [48,49]. Soil pH also affects N2O production as low pH inhibits the N2O reductase enzyme, and under these conditions the N2O/N2 ratio increases. On the other hand, high pH values favor the complete denitrification to form N2, so the N2O/N2ratio is reduced [50]. Low temperatures may block the activity of nitrous oxide reductase and denitrification [39].
N2O is also produced during the composting of plant tissues [32]. When degradable organic matter is present in the soil, large quantities of both C and N are available and large quantities of N2O are released. N2O is abundant if grain legumes residues [50], grassclover [50,51], intercropped clover [50] or cover crops [52,53] are incorporated into soil. During the growth of unfertilized legumes, lower amounts of N2O are released from the soil. However, during plant senescence high amounts of N2O are released from roots and root nodules. The incorporation of plant tissues with low C/N ratio causes the strong release of N2O [54]. In this context, legume residues should release more N2O than cereals or grasses. However, it has been found that if the carbon source is degradable and readily available the release of N2O is not affected by the C/N ratio [55].
Odd oxides of nitrogen (NOx = NO + N2O) also play an important role in the production of smog and can derive from soil, the combustion of fossil residues, lightning and fires [32]. NO concentration in the atmosphere, measured through δ15N, was found to increase after fertilization with urea and ammonium bicarbonate while nitrification and denitrification are also involved in NO production [32].

2.3.3. Nitrate Leaching

Nitrate in the soil originates from the oxidation of ammonium (nitrification). Excessive fertilization leads to losses of N in the form of NO3through leaching and its dispersion into the environment, having an impact on soil productivity, food safety, water, and air quality [56]. Nitrate nitrogen is in anionic form and therefore can be soluble in the water. In very drained soils, it percolates into soil, moving away from the rhizosphere. Rain and irrigation favor its removal into soil layers [2]. Therefore, its presence in the soil depends on the type of soil (structure and texture), and the meteorological conditions [2]. It can be higher in sandy soils than clay ones [2,50]. At the end of the production cycle, or after crop losses, the nitrate content in the soil increases, and with it the possibility of nitrogen leaching if heavy rains occur [57]. Drought periods also influence nitrate leaching in both conventional and organic systems. In the two systems in fact slow mineralization leads to the accumulation of nitrates, which will be quickly leached in case of rain incidence.
Nitrate leaching can cause eutrophication and proliferation of algae in reservoirs, and can reach humans via drinking water, causing a disease known as Blue-Baby Syndrome in which nitrate binds hemoglobin, hindering the transport of oxygen [2,58]. A total of 10 mg L−1 is the maximum permitted level for nitrate concentration in water [59,60]. It has been estimated that agricultural activities and industries release 161 Tg of nitrate [2].
Losses of nitrate are evident in various crops, especially vegetable plants that usually do not have deep roots and therefore lose most of the nitrogen supplied with fertilizers. According to de Barros Sylvestre et al. [61], 165 and 149 kg N ha−1were considered the nitrogen doses that corresponded to the maximum yield for looseleaf lettuce and crisphead lettuce, respectively. However, after the application of 150 kg N ha−1, the nitrogen taken up by lettuce plants was 57.9 kg ha−1, while 92.1 kg ha−1 remained in the soil [61]. The more damaging condition is that in which the vegetable cultivation fields are located near waterways. According to some authors, the low application rates of nitrogen fertilizers to vegetable crops reduces the yield but also the nitrate leaching [61]. The same authors [61] examined the effect of seven doses of nitrogen (0, 30, 60, 90, 120, 150, and 180 kg N ha−1) in the form of urea (47% N), applied at different times after planting, on the yield and nitrate concentration of crisphead lettuce plants (Lactuca sativa L.) grown in two seasons (summer and winter). The nitrate and ammonium content found at a depth of 20–60 cm was considered as nitrogen leached into soil. Doses higher than 60 kg N ha−1increased nitrogen leaching, while the highest ammonium content was found in 20–40 cm (summer) and 0–20 cm (winter) layers and the highest nitrate content was recorded in 40–60 cm (summer).

3. Effect of Agricultural Practices on the Fate of Nitrogen in Soil and Plants

The presence of nitrogen in the soil is mainly linked to soil organic matter (SOM) rather than minerals, and agricultural practices are responsible for the nitrogen balance in soil [56]. Soil organic carbon (SOC) represents the major component of soil organic matter and influences crop productivity. It includes labile or active carbon, which refers to the C of microbial biomass, and carbohydrates in soil [62]. When microbes mineralize soil organic matter, they release N2O, so if the soil is rich in either organic matter or organic carbon, high amounts of N2O can be recorded [50]. When SOC increases, other factors contribute to raising N2O emissions, such as the type of crop, or the type of rotations [56] (Figure 1).
Inorganic soil nitrogen represents less than 10% of the total soil nitrogen, while 90% is organic nitrogen, and its turnover is important for the nitrogen supply to plants. Organic nitrogen consists of high molecular weight polyphenols and amino acids. Amino acids are quickly mineralized and immobilized by microorganisms. The turnover of amino acids by microorganisms is slowed if glucose is added [63]. The addition of inorganic N favors the decomposition of added amino acids compared to pre-existing amino acids in the soil. Some studies have shown that organic amendments, combined with inorganic fertilizers, increased nitrogen retention in the soil [64].
The effect of agricultural practices on soil nitrogen dynamics was evaluated by three consecutive cultivations of maize plants in pots on soil, containing two levels of nitrogen fertilizer (100 and 200 kg N ha−1) and maize straw [64]. The purpose of the experiment was to evaluate the conversion of the fertilizer used (15NH4) 2SO4) into soil organic N and amino acid N. The application of a high dose of fertilizer combined with amendment increased the organic N content in the soil by 20.1%. Both the combination of high nitrogen dose and low nitrogen dose with amendment increased the N amino acid content in the soil by approximately 12.5%. The increase in organic and amino acid N was recorded at the end of the first cultivation. In subsequent crops, organic and amino acid nitrogen was reducedin the soil. According to the authors, 34% and 21% of the 15N fertilizer were converted into organic N and amino acid, respectively, in the first 10 days of fertilization, while in the following days this percentage was reduced. They showed that amino acids represented the most labile fraction of soil organic nitrogen, compared to other organic fractions. Amino acids can be directly absorbed by soil microbes through transporters on their membranes. Proteins must first be broken down into peptides and amino acids to be absorbed. According to the authors, the combination of amendments and fertilizers allowed a greater retention of N in the soil, especially in the form of amino acids. These amino acids were available to the plants which absorbed them thus increasing NUE. In the treatment where only fertilizer was applied, the excessive fertilizer was dispersed more quickly in the soil layers rather than being retained in the soil with the organic material [64].
The dynamics of nitrogen from soil to plants were shown by Smith and Chalk [65] in a work that analyzed the results of 100 works published within the last 60 years, which refer to the use of inorganic and organic fertilizers enriched with 15N. According to the authors, the distribution of 15N in the soil and over time depends not only on the form of fertilizer but also on edaphic, environmental and microbiological factors, as well as on preceding crops. NO3 and NH4+ can remain in the soil in labile form as well as they can be bound to clay in the form of NH4+. A portion of 15N was found, as organic N immobilized in soil microbes, and was made available for subsequent crops after remineralization. The authors highlighted that, at the end of the first year of application, if 15N was introduced into the soil as synthetic fertilizer, its recovery from crops, as % of N, was higher than 15N introduced as manure or organic residues. On the other hand, when 15N was introduced into the soil with manure and organic residues, it increased into the crops in the following years [65].

3.1. Tillage Practices

Tillage practices are considered important to improve the organic matter content of the first layers of the soil. With tillage, the SOM is broken and mixed with the soil, accelerating its decomposition [56]. Tillage practices have a double effect: in the short term, they immobilize nitrogen and make it less available to plants, while in the long term, they enrich the upper layers of the soil with labile and available N [56]. Couto-Vázquez and González-Prieto [56] evaluated the movement of N in different soil layers and in plants by applying a crop rotation of silage maize (Zea mays L.) and Italian ryegrass (Lolium multiflorum L.), grown with two tillage practices, namely conventional plow tillage, and minimum tillage during 14 years. The minimum tillage system was applied for eight years without tillage, and in the six subsequent years it was implemented with a bentleg subsoiler to avoid soil compaction. In the plow tillage system, the soil was plowed twice a year. To follow the path of nitrogen from soil to plants, the authors used the isotope 15N fertilizer in both systems, and in three periods, October, March, and May of the following year. The authors analyzed the nitrogen accumulated in soil (0−60 cm) and plants. In the samples taken in October, the authors found in the soil of both systems a higher pool of 15N fertilizer in the nitrate form than the ammonium one, while its quantity decreased with increasing soil depth. Moreover, on this date, the effect of the two systems was not significant. In the samples taken later (March and May), the 15N fertilizer was influenced by the tillage system, the depth of the soil, and their interaction, with more nitrogen being recorded in the minimum tillage system. The recovery efficiency of nitrogen (REN) in plants had the highest values in May and in the plow tillage system, as compared to the minimum tillage system. As for the 15N fertilizer found in the soil after harvest, its quantity was higher in October than in March and May. The amount of N found in the harvested plants was greater in minimum tillage than in the plow tillage. Furthermore, the percentage of N was higher in ryegrass than in maize. Finally, at the end of the experiment, the authors found that 15N fertilizer, immobilized in the soil at root level, was greater in the minimum tillage system than the plow tillage. The authors thus highlighted that the minimum tillage system offered less labile nitrogen to plants in the short term, while in the long term it offered more nitrogen available in the upper soil layers.

3.2. Organic Farming

In recent years, there has been a lot of interest in organic farming around the world, and in Europe about 6 × 106 hectares of agricultural land are devoted to organic farming [66,67]. Organic farming is an agricultural practice in which the health of the environment and people is guaranteed through the preservation of the nutrientscycle, while synthetic and external energy sources are not used [68]. Scholars are trying to understand if organic farming contributes both to the release of greenhouse gases and increases in nitrate leaching [69,70]. In both organic and non-inorganic crops, crop residues are left on the soil. However, in organic farming, there are longer rotations, such as green manures, leys, cover crops, and intercrops [71]. In Europe, these rotations are subject to specific regulations [72], according to which the use of synthetic nitrogen fertilizers and pesticides is not allowed. According to this regulation, agricultural systems that use inorganic fertilizers, pesticides, and short rotations are defined as conventional farming or non-organic farming.
In organic farming, there are other organic sources, such as animal manures and composts [73]. The release of N from the different organic sources depends on the quantity of N contained in these sources, on the degradation of these sources, and the C/N ratio. When the C/N ratio of the organic sources added to the soil is high, for example 12:1 (pig slurry or poultry manure) or 21:1 (cattle slurry), the contained nitrogen is released very slowly. The organic matter introduced into organic crops favors the growth, development, and diversity of decomposing organisms, and the higher activity of these microorganisms compared to non-fertilized soils or soils fertilized with mineral fertilizers [74,75]. Carbon and nitrogen from microbial biomass, enzymatic activities, such as dehydrogenase, urease, and protease, were found significantly higher in organic crops than in non-organic ones [75]. Generally, nitrogen is immediately immobilized by microorganisms, while its mineralization can even begin several months later [50,76]. The slow mineralization of nitrogen in organic fertilizers and plant residues makes it necessary to synchronize the release of N from these sources, and the uptake of N by plants, otherwise there is an accumulation of mineral and available nitrogen in the soil, which will subsequently be lost by volatilization and leaching. According to Intergovernmental Panel on Climate Change(IPCC) [77], 1% of nitrogen supplied with fertilizers and organic sources is re-emitted into the environment in the form of N2O. In non-organic systems, N2O emissions were observed immediately after fertilization in moist soil [50], while in organic systems such emissions were observed after the introduction of plant residues into the soil [51,78]. As organic systems have more organic matter, they were responsible for higher N2O emissions [50].
Liquid organic amendments had a high content of NH4-N and easily degradable carbon and nitrogen, compared to solid organic amendments, so that the release of N2O was also higher [78,79,80]. The rotation systems and their management might also influence nitrogen mineralization (potentially mineralizable N (PMN) pool). Unlike non-organic rotations, biological rotations include pulses and temporary fodder crops (such as alfalfa, clover, and ryegrass). Some authors reported that organic systems release up to 300 kg N ha−1 and that the more the rotations were different from each other, the more N was mineralizable. In this context, mineralizable N was 112% higher than the mineralizable nitrogen of conventional systems [50].
After one year and three years of grass and clover ley presence, 61 and 95 kg N ha−1 were found in the 0–90 cm soil layer, respectively [78]. This nitrogen was not readily available to plants but became available after harvest or in subsequent years [50]. According to some scholars, organic farming did not allow the release of nutrients when they were actually required by the plants [2]. Furthermore, the losses of nitrogen as nitrate with leaching were greater in organic farming than in conventional agriculture [2]. However, organic systems could mitigate climate change with a reduction in nitrogen gas emissions and carbon sequestration in the soil. Another advantage is that crop yields were usually equal or greater than those obtained with conventional agriculture [2].

3.3. Cover Crops, Green Manures and Catch Crops

Cover crops, green manures, and catch crops are also defined as Agro-ecological service crops (ASCs) [81]. ASCs bring numerous benefits to agriculture (Figure 1). They suppress weeds, increase the organic substance of the soil, slow down the leaching of nitrogen and improve the structure of the soil. They achieve this goal in both non-organic systems [82] and organic ones [57,83,84]. A reduction from 133 to 6 kg N ha−1 (−95%) in nitrate leaching was shown in a potato crop grown on soil previously cultivated with grain legume, while a reduction in nitrate leaching from 213 to 17 kg N ha−1 (−92%) was recorded when potato cultivation was cultivated after green manure [57]. The different ASCs can have different effects on the accumulation of mineral nitrogen in the soil. Cereal crops consume nitrogen [83,85], while legumes fix nitrogen and make it available for subsequent crops [81]. The simultaneous use of cereals and legumes could reduce both the consumption of nitrogen fertilizers and nitrogen leaching [83].
ASCs are mowed and deposited on the ground or mowed and completely buried in the ground (with tillage). Another way to incorporate the ASCs is the use of roller-crimping, by which the ASC crop is not collected, but is only crushed to the ground, creating a mulch film made from vegetable biomass. In no-tillage organic systems, where herbicides are not allowed, the use of ASCs represents a very useful practice for suppressing weeds [86,87]. The benefits of using the roller-crimper are also economic ones, since it reduces the labor, and the energy required to uproot crops [87,88].
Hefner et al. [81] compared the full incorporation and roller crimping techniques of legume and cereal ASCs (pea, pea/cereal mixtures, and cereals) to understand nitrogen turnover in soil and in organically cultivated cabbage plants in three regions of Northern and Eastern Europe, Estonia, Denmark, and Belgium, considering two cultivation cycles. The authors showed that ASCs reduced N availability for cabbage plants from 37% to 73%, compared to bare soil, in particular with cereals. Higher availability of mineral nitrogen in the soil occurred with the full incorporation completed in April and May rather than with roller-crimping carried out in May and June. The lowest cabbage yields were obtained after roller-crimping rather than full incorporation or bare soil. However, with both full incorporation and roller-crimping, no mineral nitrogen losses were shown in the soil deep layers.
The effects of cover crops (CCs) on crop production depend on soil type, climatic conditions, and plant species used [89,90,91]. For example, it has been shown that Secale cereale L. (cereal rye) used as CC reduced the leaching of nitrate in the soil [62]. The use of Vicia villosa Roth (hairy vetch) as CC reduced the content of organic C and N, compared to treatments without CC. Instead, the mixed-use of Secale cereale L. and Vicia villosa Roth increased the content of organic C and N.
Singh et al. [91] analyzed three crop rotations, corn + cereal rye + soybean + hairy vetch (CRSHV), corn + cereal rye + soybean + oat-radish (CRSOR), and corn–soybean rotation without winter CC (CS), and two tillage systems (conventional tillage (CT) and no tillage (NT)). Each crop rotation lasted two years. In tillage treatment, plant residues were incorporated in the soil, unlike non-tillage treatment. The water extractable nitrogen (WEN) and N total reduced with depth regardless of the type of rotation and tillage systems. The presence of cereal in both CCs reduced the WEN in the soil (by 1–2 kg ha−1), compared to the rotation without CC. In the two rotations with CCs (CRSHV and CRSOR), WEN was lower than in CS without CC. This result may be due to the higher N absorption of cereal rye in the two rotations, and the higher C/N ratio in the two rotations compared to CS without CC [91]. Hairy vetch had a C/N of 10:1, in oats + radish it was 20:1, and weeds in CS had a C/N ratio of 22:1. Therefore in the presence of hairy vetch, there was a faster decomposition of residues and N was easily taken from corn to grow [91].

3.4. Management Intensive Grazing

Management intensive grazing (MIG) is livestock graze for about 24 h, which is beneficial for the health of the animals and for reducing the costs for feeding. Moreover, it fertilizes the soil and increases productivity [92,93]. It is widely used in North Eastern United States and in many other countries with forage-based systems as in South America (Argentina, Brazil, etc.), for the production of organic milk [94]. Furthermore, according to many scholars, it fights climate change through soil carbon sequestration as it increases C inputs into soil [95,96,97,98]. However, it appears that MIG systems contribute to a strong release of N2O into the atmosphere [99,100,101]. This happens because in soil nitrogen follows the biogeochemical cycle of carbon, and as the carbon accumulates, the substrate available for the microorganisms that release N2Ois created. The increase in microbial activity, following the continuous organic inputs, consumes oxygen and creates anaerobic micro areas where the activity of microorganisms that produce N2O is created. Some studies, however, oppose the idea that the C sequestration in the soil favors the release of N2O. The different relationship between C sequestration and release of N2O depends on several factors, including the type of C inputs, climatic conditions, soil characteristics, and agricultural practices [102] (Figure 1). Contosta et al. [92], examined the soil C content of an organic pasture, in three states of the northeastern United States where direct and fresh manure was the nitrogen input in order to find the relationship between MIG practice, soil C sequestration, and N2O release. The authors found that MIG practice increased both total C (%) (0–15 cm) and total N (t N ha−1) in soil (0–50 cm), whereas the C/N ratio was reduced, compared to cultivation hay, used as control. After two years of studies, the authors also reported a 33% increase in N2O in grazed fields and compared to hayed fields. They evaluated the activity of two nitrogen-degrading enzymes, N-acetyl-glucosaminidase and leucine aminopeptidase and they showed a higher trend of their activity in grazed fields, with a mean value of 3.33 and 2.53 pmol g dry soil−1 min−1, respectively. Net nitrification was also greater in grazed fields, with a mean value of 6.26 μg NO3N g dry soil−1 day−1.

4. Genes Involved in Nitrogen Transport in Plants

Some genetic approaches to improve crops yield are aimed at the identification and expression of genes involved in nitrogen uptake [24,103]. Nitrogen enters plants mainly in the form of nitrate and ammonium and can be transported through a low affinity transport system (LATS) or a high affinity transport system (HATS). LATS is active if the nitrogen concentration in the solution around the roots is greater than 1 mM. On the other hand, HATS is active if the external nitrogen concentration is less than 1 mM [24,104].
From studies carried out on Arabidopsis, four families of genes coding for nitrogen transporters have been identified: NO3 transporter1/peptide (NRT1 or NPF, 53 members; [24]), NO3 transporter 2 (NRT2, seven members), the chloride channel (CLC, seven members), and slow anion channel associated 1 homologue (SLAC/SLAH, five members) [5,24,105] (Table 1) (Figure 2).
Plant aquaporins (AQPs) are intrinsic proteins that form channels across plasma membranes and through which water and anions, such as nitrate, may pass [106]. The role of aquaporins in nitrogen absorption has been demonstrated by the different expressions of the AQP genes concerning the availability of nitrogen in the external environment. AtTIP1; 2, AtTIP2; 1, and AtTIP4; 1 genes encoding aquaporins in Arabidopsis, were found overexpressed under conditions of reduced nitrogen concentration outside the plant [24].
Other genes involved in nitrogen transport are ZmPIP1; 5b which is involved in water and urea transport in corn roots [107]; AtTIP2; 3 which is involved in ammonium transport in vacuoles in Arabidopsis plants [24]. Moreover, PtdPIP1; 2 and PtdSIP1; 2 belong to the aquaporin family in Populus trichocarpa [24].
Genetic studies on Arabidopsis revealed the role of NRT1.1 and NRT2.1 not only as nitrate transporters, but also as signal transmitters to genes that are involved in changing the root architecture in response to external nitrate concentration [108,109]. In particular, if the external concentration of nitrate is high: the nitrate enters the cell through NRT1.1 and it stimulates calcium accumulation. The calcineurin B-like protein perceives the changes in intracellular calcium concentration and activates the enzymes CBL, CIPK8, and the transcription factor NLP7. This cascade of interactions activates nitrate reductase and nitrite reductase genes, and the genes involved in the absorption of nitrate [110,111]. The primary root growth genes are also activated in this cascade (Figure 2).
Under conditions of low nitrate concentration, NRT1.1 is phosphorylated on the amino acid Thr101 by CIPK23 (calcineurin B-like protein-interacting kinase 23) and the following biochemical changes are observed in cells: (i) nitrate activates the genes involved in the adaptation to nitrogen stress through the activation of the transcription factors NLP7 and the NLA gene [112,113,114]. NLA gene works by reducing the activity of nitrate reductase and GS. NLP7 gene, which codes for nodule inception like 7 protein, was found to inhibit the plant’s adaptation to stress derived from low nitrogen concentrations, thus counteracting the activity of NLA [114]; (ii) nitrate can regulate drought tolerance through the repression of mi169 and the transcription factor NFY [115]; (iii) nitrate can act directly by activating lateral root growth [111] (Figure 2).
Micro RNAs are small non-coding RNAs that regulate the genes involved in growth, development, and adaptation to abiotic and biotic stresses, both in plants and animals [116]. Studies in Arabidopsis have shown that certain miRNAs can be regulated by the availability of external nitrate [117]. MiR167, together with auxin-responsive factor ARF8, activates the genes that code for auxins and thereby trigger lateral root formation, or block lateral root formation in the presence of high external nitrate [118]. Conditions of low external nitrate intake were found to repress miR398 and miR169. MiR169 repression is involved in the transmission of external nitrogen depletion between shoots and roots [119] (Figure 2).
The effect of nitrate on lateral root growth also involves hormones. Auxin has a wide range of activities that take place in shoots and roots. For example, Arabidopsis plants transferred from a medium with high nitrate concentration to low nitrate concentration, increased the auxin content [111]. Their activity was found to inhibit lateral root growth in the presence of high external nitrate [111]. Nitrate can also regulate the genes that synthesize auxins through the transcription factor ARF8 [117,118]. Abscisic acid, activated by a high concentration of nitrate in the cell, regulates the dormancy of seeds, through the CYP707A2 gene, and also inhibits the growth of lateral roots. The IPT3 gene in Arabidopsis is involved in the synthesis of cytokinins and is activated by high concentrations of nitrate [111]. Cytokinins pass nitrogen levels in the roots to the shoots and their activity is inhibited by NRT2.1 [111].
The organic molecules, originating from the reduction of nitrate to ammonium in the cell, suppress the growth of lateral roots by inhibiting the transcription factor ANR1 [111]. They induce the expression of auxin genes through the reduction of the transcription factor ARF8 and miRNA167.
Genetic studies on Arabidopsis have revealed two transcription factors, Circadian Clock Associated-1 (CCA1), and the golden 2-like transcription factor 1 (GLK1), which activate the gene that encodes Glutamine synthetase 1.3 (GLN1.3) and inhibit the gene of Glutamate dehydrogenase 1 (GDH1) and bZIP1 transcription factor which was predicted to positively affect the expression of Asparagine synthetase 1 (ASN1) [111] (Figure 2).
Kollaricsné Horváth et al. [120] examined the response of five potato cultivars (White Lady, Katica, Hópehely, Chipke, and S440) to three nitrogen levels (7.5, 3 and 0.75 mmol of nitrate), evaluating the expression of genes which synthesize nitrate-reductase (NR) that reduces nitrate to nitrite, nitrite-reductase (NiR) that reduces nitrite to ammonium, asparagine synthase (AS) that catalyzes the synthesis of asparagine from glutamate and finally the gene that encodes the ammonium transporter (AMT). The results showed that the expression of all the enzymes examined was different according to the cultivar. NR did not change its expression based on different nitrogen levels. The expression of AMT was different at different nitrogen doses. Instead, Nir and AS expressions were similar at medium and high doses of nitrogen but changed their activity under a low nitrogen supply.
Chen et al. [104] examined two cultivars of barley (Hordeum vulgare L.), BI-04 and BI-45, which were, respectively, tolerant and sensitive to low nitrogen and were cultivated with a reduced level of nitrogen (0.24 mM NH4NO3) in the nutrient solution. The results of their work showed that the genes encoding nitrite reductase (HvNIR1), chloroplastic glutamine synthetase (HvGS2), and ferredoxin-dependent glutamate synthase (HvGLU2), were expressed only in the shoots of tolerant species, while HvGLU2 and HvGS2 were expressed only in the roots of the tolerant cultivars. Both cultivars had a lower expression of the gene encoding asparagine synthetase (HvASN1).
Yang et al. [121] examined the gene expression of two cultivars of Sorghum bicolor (L.) Moench (Keza15, tolerant to low nitrogen supplies, and Suiza7 sensitive to low external nitrogen concentrations), grown in hydroponics and subjected to nitrogen stress (0 mmol/L), compared to control plants which were grown with 4 mmol/L of Ca(NO3)2 in the nutrient solution. Genes involved in the synthesis of high-affinity nitrate transporters (NRT2.4, NRT3.1, and NRT4.5) were over-expressed in the KZ15 cultivar. The genes examined were considered by authors as candidates for increasing tolerance to low nitrogen stress. Other genes, over-expressed in KZ15 under stress conditions, encoded various transcription factor families (WRKY, MYB, bHLH, ethylene-responsive factor, and nuclear factor-Y or NF-Y). In both cultivars, under nitrogen stress conditions, there was an over-expression of glutathione metabolism genes.
Liao et al. [8] demonstrated the involvement and different regulation of BnaCLC genes (a family of genes encoding Chloride Channel; CLC) in Brassica napus, based on external nitrate replenishment. CLCs are channels that transport nitrate and chlorine at vacuoles level [8]. The authors identified the CLCa-3 gene as fundamental in the transport of nitrate in vacuoles in B.napus, since its expression was induced up to 20 times in shoots and 6 times in roots, following the nitrate replenishment.

5. Accumulation of Nitrate in Rocket Plants: Effect of Biological Activity, Fertilization, and Agricultural Practices

Vegetables make a high contribution to the intake of nitrates in human diet on a daily basis [122]. If nitrate is absorbed without being reduced, it accumulates in plant cells [123]. Many factors influence this accumulation, such as the physical and chemical characteristics of soil [123,124], the plant species [123,125,126,127,128], the fertilization regime [129,130], and the growing season and climatic conditions [131]. Since nitrate accumulates mainly in the leaves, leafy vegetables are considered the richest sources of nitrates among vegetables [132]. Furthermore, they have rapid growth, so they can quickly absorb high amounts of nitrates [128,133,134]. In Mediterranean countries, characterized by a temperate and sub-tropical climate and with high intensity of light, a high activity of nitrate reductase is allowed and therefore a reduced concentration of nitrates in leafy vegetables, both grown in open fields and greenhouses, should be expected [135].
The positive aspects of nitrates on human health should also be considered. Dietary nitrate generates nitric oxide (NO), which has positive effects on the vascular system, blood pressure regulation, atherosclerosis, and ischemia [136,137], muscle activity increase [138], and triglycerides reduction [139].
However, nitrates and nitrites are considered carcinogenic compounds for humans by the International Agency for Research on Cancer [140], since they react with amines and amides, forming N-nitrous compounds, which are carcinogens [122,140]. High nitrate levels have also been associated with diseases, such as hypothyroidism and methemoglobinemia [122,141]. Due to these results, the World Health Organization (WHO) and the European Food Safety Authority [142] made it necessary to establish safety limits for the intake of nitrate from food and water, establishing the acceptable daily intake (ADI) of 3.7 mg/kg body weight/day [135]. To achieve this goal, the European Community has established maximum limits for the nitrate content in spinach, lettuce, arugula, and cereals, which are considered as nitrate accumulators [135]. The European regulation has established the highest limits of nitrate content for rocket at 7000 mg/kg if grown in winter (from 1 October to 31 March), and at 6000 mg/kg if grown in summer (from 1 April to 30 September). It has been observed that the maximum limits of nitrate in plants, established by the European Community, can be exceeded, in particular for rocket and spinach, when nitrogen fertilization rates exceed 200 kg/ha [135]. The consumption of leafy vegetables with high nitrate content becomes risky for people who eat only vegetables, such as vegetarians and vegans.
Leon and Luzardo [143] determined the nitrate level in watercress and chard, which are rich in nitrate, but are non-regulated for nitrate content by European Regulation, and in different varieties of lettuce (romaine, iceberg, baby lettuce, 4th range salads), arugula and spinach, all regulated, in the Canary Islands. The authors recorded the highest nitrate values in rocket plants (3144.2 mg/kg) compared to other vegetables. However, these values were lower than those reported by other authors [132]. Therefore, the authors linked these results to the dry and sunny climate of the Canary Islands (average annual T in the range 18–24 °C, and a high number of sunshine hours both in winter and in summer) [143].
Light is essential for photosynthesis, which provides the electrons needed to reduce nitrates through nitrate reductase [144]. Photosynthesis also provides the carbonaceous skeletons for the assimilation of ammonium ions. On the other hand, studies carried out under controlled conditions with low irradiance have shown the reduced activity of nitrate reductase and the consequent accumulation of nitrates in spinach and lettuce leaves [135].
The effect of nitrogen fertilization on nitrate accumulation has been extensively studied under controlled conditions, such as cultivation in pots [145,146], or in soilless systems [147]. However, little is reported for field crops and for the effect of application time under field growing conditions [135].
As for cultivation practices, generally in the literature conventional practices are compared with organic ones. However, the results are contradictory, so that the nitrate content obtained with one agricultural practice can be similar, higher or lower than that obtained with the compared practice [130,148,149]. The reason for the contradictory results lies in the type of fertilizers used, the plant species, and the growing site [130]. According to many authors, organic fertilization, characterized by the slow release of nitrogen forms available to plants, involves a reduced content of nitrate in plants, compared to mineral fertilizers, while the order of nitrate content in relation to the cultivation system is hydroponic–conventional–organic [135]. Moreover, Kyriacou et al. [135] found that by applying nitrogen, organic or inorganic in base-dressing mode, and at doses of 100 kg N ha−1, the nitrate levels did not exceed the limits established by the EC.

6. Useful Approaches to Mitigate Nitrogen Losses

The integrated approach system (IPS) is based on the interconnection between different agricultural systems and the integrated use of plant and animal residues, with minimal nitrogen inputs [2]. This is well represented by the exchange of manure and vegetable residues for livestock, between farmers and shepherds of the same territory. This approach is widely applied in Nigeria and the Republic of Benin, East Africa [2]. Integrated crop–livestock systems (ICLS) are systems in which livestock and crops are kept together in the same area. In such systems, animals feed on a crop, returning nutrients to the soil through urine and manure [150]. In this way, soil organic matter increases, as well as the microbial diversity and their activity. Such systems guarantee nutrient cycle and production for a long time, without resorting to external nitrogen inputs, thus minimizing the impact of inorganic fertilizers on the environment. Furthermore, herbs, which cannot be eaten by humans, are transformed into food (meat, milk) by ruminants. Farias et al. [150] compared a conventional cropping system (soybean crop succeeded by a non-grazed Italian ryegrass cover crop fertilized with N, P, K), and an ICLS (soybean–Italian ryegrass rotation grazed by sheep), to test their effect on herbage and animal production. The authors recorded a greater total herbage production and greater stocking rates in the ICLS system, compared to the conventional cropping system. The positive effect of ICLS was also observed in the greater soybean yield [150].
One approach to mitigate the release of ammonia from the soil is represented by Farm Best Available Techniques (BATs), such as the burying of fertilizers, or the application of fertilizers with urease inhibitors [151]. If the animal slurry is used, nitrification inhibitors can be also added to the soil [152]. To reduce N2O losses, soil pH can be increased by lime addition, while avoiding anaerobic conditions with suitable soil irrigation, or by reducing the passage of animals that could compact the soil thus creating a condition of anaerobiosis, could also help to this matter [151,153].
Urease inhibitors are N- (n-butyl) thiophosphoric triamide (NBPT) and phenylphosphorodiamidate, while nitrification inhibitors are dicyandiamide (DCD) and 3,4-dimethyl pyrazole phosphate (DMPP). The application of NBPT to urea resulted in a 42% reduction in NH3 from sunflower cultivation in Spain [2]. Similar results were found in wheat crops in Australia [2] and cereals in the UK [2]. Similarly, urea associated with DMPP and DCD reduced the release of N2O by about 70% from American soils [154]. In anoxic conditions with the continuous presence of water, as in the case of rice fields, nitrification and denitrification contribute highly to the loss of nitrogen (N2O and NH3) [19]. In this context, the use of urea granules (0.7 g), buried deep in the soil, was used and this technique was useful in terms of rice yield, and in reducing nitrogen losses [155,156]. Similarly, the deep burying of mineral and organic fertilizers attenuated the volatilization of ammonia in corn crops, compared to the superficial spreading of fertilizers [157].
The wastewater in livestock farms is rich in nitrogen, due to the feces and urine of the animals. To reduce ammonia and N2O emissions from these sources, it is possible to resort to the introduction of microalgae, which use these compounds for their growth [158] and convert inorganic nitrogen into organic compounds [159]. The introduction of Chlorella sp. [2] and Gracilaria birdiae significantly reduced nitrogen oxide emissions in wastewater [160].
From the point of view of genetic engineering, scientists have tried to modify cereals towards nitrogen fixation. Nod factors (legume-rhizobia symbiosis) and Myc factors (cereal-arbuscular mycorrhizal fungal symbiosis) are similar, so that it would be possible to induce expression of Nod genes in cereals [2]. On the other hand, strong communication with signals was observed between cereals and microbes of the rhizosphere [161,162]. However, these studies are still relegated to the laboratory and are not extrapolated to field conditions.
Site-specific nutrient management strategy (SSNM) is a strategy based on the analysis of a specific crop, its nutritional needs, and the maximum use of available resources, to reach the optimal dose of nitrogen for crop [2].
In the work by Candido et al. [163], the activity of the biostimulant Azoxystrobin (Ortiva®, Syngenta) on the yield, quality, and NUE of rocket plants, grown at two nitrogen levels (40 and 140 kg ha−1, in the form of ammonium nitrate), was evaluated. In plants treated with biostimulants, nitrate content did not vary compared to the control plants (plants treated with the two nitrogen levels, but without biostimulant). However, the presence of biostimulant improved rocket quality in terms of higher content of pigments (chlorophyll and carotenoids), phenols, and antioxidant activity. Therefore, the biostimulant application could be an eco-sustainable alternative to the fertilizer treatment in rocket plants.

7. Conclusions

The use of nitrogen fertilizers in crop production was a significant breakthrough that made it possible to increase yields and food production. However, despite the positive effects of nitrogen fertilizer on crops its irrational use has made it a threat to food security and the environment around the world. These negative effects of nitrogen need to be alleviated with sustainable cultivation practices. One solution is the search and breeding for genotypes tolerant to nitrogen stress, as well as the increase of the NUE of crops through rational fertilization regimes and reduced nitrogen leaching. Unfortunately, climate change, also linked to nitrogen losses in the environment seems unstoppable and nitrogen fertilization management needs urgent measures to be taken. The COVID-19 pandemic has shown that a reduction in greenhouse gases can be achieved if human activities slow down. However, since it is not possible to stop human activities for long periods, definite decisions to curb pollution, resulting from the uncontrolled use of nitrogen, should be taken on a global and national level.

Author Contributions

Conceptualization, M.G. and Y.R.; writing—original draft preparation, M.G., S.A.P. and Y.R.; writing—review and editing, M.G., S.A.P. and Y.R.; visualization, M.G., S.A.P. and Y.R.; supervision, M.G., S.A.P. and Y.R.; project administration, Y.R.; funding acquisition, M.G. and Y.R. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Institutional Review Board Statement

Not applicable.

Informed Consent Statement

Not applicable.

Data Availability Statement

Not applicable.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Values of nitrogen (N) inputs and losses through worldwide agricultural activities.N input references: [5,24,29]; N loss references: [2,5,36,61].
Figure 1. Values of nitrogen (N) inputs and losses through worldwide agricultural activities.N input references: [5,24,29]; N loss references: [2,5,36,61].
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Figure 2. A schematic presentation of the interactions of the main genes involved in nitrogen transport in plants.
Figure 2. A schematic presentation of the interactions of the main genes involved in nitrogen transport in plants.
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Table 1. Genes involved in N assimilation.
Table 1. Genes involved in N assimilation.
GeneFunctionSpeciesReferences
NRT1 or NPF, (53 members)Low affinity of nitrate transportArabidopsis[24]
NRT2 (seven members)High affinity of nitrate transportArabidopsis[24]
CLC (seven members)Chlorine and nitrate transportArabidopsis[24]
SLAC/SLAH, five membersNitrate transportArabidopsis[24]
AtTIP1;2, AtTIP2;1, AtTIP4;1Synthesis of aquoporinsArabidopsis[24]
AtTIP2; 3Ammonium transport in vacuolesArabidopsis[24]
ZmPIP1; 5bWater and urea transport in corn rootsCorn[107]
PtdPIP1; 2 e PtdSIP1; 2Water and urea transport in corn rootsPopulus trichocarpa[24]
NLAReduction of nitrate reductase and glutamine synthetase activityArabidopsis[112,113]
NLP7Inhibition of NLA geneArabidopsis[112,113]
CYP707A2Inhibition of lateral roots growthArabidopsis[111]
IPT3Synthesis of cytokininsArabidopsis[111]
ASN1Activated by the transcription factor bZIP1, encoding for asparaginesynthetaseArabidopsis[111]
GLN1.3Activated by the transcription factor CCA1, encoding for
glutamine synthetase
Arabidopsis[111]
GDH1Synthesis of glutamate dehydrogenaseArabidopsis[111]
HvNiR1Synthesis of nitrite reductaseBarley[104]
HvGS1_1Synthesis of cytoplasmic
glutamine synthetase
Barley[104]
HvGS2Synthesis of chloroplasticglutamine synthetaseBarley[104]
HvGLU2Synthesis of ferredoxin-dependent glutamate synthaseBarley[104]
HvASN1,Synthesis of asparagine synthetaseBarley[104]
HvNRT2.2, HvNRT2.3,
HvNRT3.1,
HvNRT3.1
High affinity of nitrate transportBarley[104]
HvNIA1, HvNIA2,Synthesis of nitrate reductaseBarley[104]
BnaCLCsGenes family involved in the nitrate transport in vacuolesBrassica Napus L.[8]
OsDOF18Synthesis of transcription factors that activate genes for ammonium absorptionRice[8]
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Giordano, M.; Petropoulos, S.A.; Rouphael, Y. The Fate of Nitrogen from Soil to Plants: Influence of Agricultural Practices in Modern Agriculture. Agriculture 2021, 11, 944. https://0-doi-org.brum.beds.ac.uk/10.3390/agriculture11100944

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Giordano M, Petropoulos SA, Rouphael Y. The Fate of Nitrogen from Soil to Plants: Influence of Agricultural Practices in Modern Agriculture. Agriculture. 2021; 11(10):944. https://0-doi-org.brum.beds.ac.uk/10.3390/agriculture11100944

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Giordano, Maria, Spyridon A. Petropoulos, and Youssef Rouphael. 2021. "The Fate of Nitrogen from Soil to Plants: Influence of Agricultural Practices in Modern Agriculture" Agriculture 11, no. 10: 944. https://0-doi-org.brum.beds.ac.uk/10.3390/agriculture11100944

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