Next Article in Journal
Comparative Taxonomic Study of Launaea Cass. (Asteraceae, Cichorioideae) in Egypt
Previous Article in Journal
Genetic Evidence Confirms That the Porostomate Nudibranch Dendrodoris gunnamatta Allan, 1932 Is a Morphotype of Dendrodoris krusensternii (Gray, 1850) (Gastropoda: Nudibranchia)
 
 
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae)

by
Wilson J. E. M. Costa
Laboratory of Systematics and Evolution of Teleost Fishes, Institute of Biology, Federal University of Rio de Janeiro, Caixa Postal 68049, Rio de Janeiro CEP 21941-971, Brazil
Submission received: 14 May 2021 / Revised: 1 June 2021 / Accepted: 9 June 2021 / Published: 16 June 2021

Abstract

:
Trichomycterus has been considered for a long time to be the most problematic genus of the diverse neotropical subfamily Trichomycterinae. Recently, Trichomycterus was restricted to a clade from eastern South America supported by molecular data, but no unique morphological character state was found to distinguish it, making it difficult to allocate new species based on morphology alone. The objectives of this study were to conduct an osteological comparative analysis comprising a large sample of valid species of Trichomycterus, to conduct a total evidence phylogenetic analysis, combining osteological characters and a multigene database, and to propose an intrageneric classification based on the results of the phylogenetic analysis. Fifty-two osteological characters were combined with a multigene molecular data set of 2974 bp for 44 species of Trichomycterus, and 21 outgroups generated a well-supported phylogenetic tree, making it possible to delimit and diagnose intrageneric lineages, of which six subgenera are recognized. The high morphological diversity of osteological structures herein first reported for Trichomycterus from eastern South America is possibly related to some ecological specializations. This study shows that osteological characters combined with molecular data may be useful to consistently delimit and distinguish between trichomycterines, shedding light on the still persistent problems in trichomycterine systematics.

Graphical Abstract

1. Introduction

The spectacular diversity of South American freshwater fishes has been repeatedly reported in the recent literature [1,2]. Among the most iconic fish groups in the region is the Trichomycteridae, a neotropical family of catfishes including the popularly known candiru [3] and many other taxa with uncommon morphological and ecological specializations [4,5,6,7]. The greatest species diversity among trichomycterids occurs in the Trichomycterinae, a subfamily containing about 250 valid species [8] distributed in all the main river basins of South America [9]. The Trichomycterinae, hereafter trichomycterines, are present in a large array of freshwater environments from southern Central America to southern South America, including Lake Titicaca in the central Andes, Patagonian rivers, and Amazonian lowland streams [10]. However, trichomycterine species diversity is particularly high in rivers draining the Andes in western South America and the mountain ranges of eastern South America [11]. Among the eight genera included in this subfamily, species of Cambeva Katz, Barbosa, Mattos and Costa 2018, Eremophilus Humboldt 1805, Hatcheria Eigenmann 1909, Rhizosomichthys Miles 1943, Silvinichthys Arratia 1998 and Trichomycterus Valenciennes 1832 typically inhabit aquatic mountain environments, whereas members of the genera Bullockia Arratia, Chang, Menu-Marque and Rojas 1978, Ituglanis Costa and Bockmann 1993 and Scleronema Eigenmann 1917 are found in low altitude streams [10,12,13,14]. At least one species inhabits a phreatic environment [15], whereas several others are specialized troglomorphic species [16,17].
The taxonomy of the trichomycterine genus Trichomycterus has been considered the most problematic among trichomycterids [18]. Its diagnosis was limited to a combination of features allowing to include all species lacking the derived character states diagnosing the other trichomycterine genera [13,14,18]. As a result, Trichomycterus comprised a broad artificial assemblage of trichomycterids, occupying the whole geographical range of the family. Even after some species of Trichomycterus being transferred to Ituglanis and Silvinichthys [14,19], Trichomycterus was still considered as a paraphyletic genus, with over 100 valid species, part of them endemic to the Andes and adjacent high elevation areas of northern South America, and others from eastern South America [20,21].
Concordantly to previous predictions, recent multigene analyses have strongly indicated Trichomycterus as paraphyletic [9,22]. In these analyses, trichomycterines were grouped in two major clades, a well-supported clade containing taxa endemic from eastern South America, including several species of Trichomycterus and Scleronema, and another clade, weakly supported containing the remaining trichomycterine genera and several other species of Trichomycterus from western and northern South America. Within the inclusive eastern South American clade (hereafter CST-clade), all analyses strongly supported three subclades: one comprising several species of Trichomycterus from eastern Brazil, including its type species T. nigricans Valenciennes, 1832; another one comprising species of Scleronema; and a third subclade, sister to Scleronema comprising nominal species placed in Trichomycterus [9,22]. The nomenclatural solution found by Katz et al. [9] was to restrict Trichomycterus to the molecularly well-supported subclade including T. nigricans and to describe a new genus Cambeva Katz, Barbosa, Mattos and Costa 2018 for the subclade sister to Scleronema. Presently, Cambeva comprises 29 species [23], Scleronema, eight species [24] and Trichomycterus sensu Katz et al. [9] (hereafter Trichomycterus s.s. [sensu stricto]), 60 species [25]. Trichomycterus s.s. occurs in a broad area between the Rio de Contas basin, north-eastern Brazil, at about 13°30′ S [26] and the rivers draining the Baía de Paranaguá basin, in southern Brazil, at about 48°15′ S [27].
The classification proposed by Katz et al. [9] solved an old taxonomical problem regarding monophyly and delimitation of Trichomycterus, but also imposed some practical difficulties for subsequent taxonomical studies since no unique apomorphic morphological character state was found by Katz et al. [9] for Trichomycterus s.s. The absence of a formal unambiguous morphological diagnosis for Trichomycterus and the absence of intrageneric comparative morphological studies involving a broad taxon sample makes it difficult to allocate new species on the basis of morphology alone. The objective of this study was to conduct an osteological comparative analysis comprising a large sample of valid species of Trichomycterus s.s., integrating with a multigene dataset in order to perform the most comprehensive phylogenetic study on this clade.

History of Trichomycterus Intrageneric Classification

Due to the large number of species and absence of detailed comparative studies in Trichomycterus, some taxonomical studies have tried to delimit informal intrageneric groups when diagnosing new species. Costa [13] tentatively delimited unnamed groups and subgroups of Trichomycterus s.s. from south-eastern and eastern Brazil based on some putative apomorphic character states of the external morphology, such as the relative position of supraorbital pores s6, the relative position between the urogenital orifice and the dorsal-fin base, relative position of pelvic-fin bases, barbels extent, caudal-fin shape, and color patterns. Species were then divided into two main groups, the first one including most species presently placed in Trichomycterus s.s. that were described before 1992, and a second one comprising T. reinhardti (Eigenmann 1917) and species presently placed in the T. brasiliensis group (see below) and in Ituglanis. Species presently placed in Cambeva were then considered distantly related from those two groups and placed in a separate third group.
Barbosa and Costa [28] named the T. brasiliensis species group based on derived conditions of osteological characters and color pattern. In spite of some diagnosis changes [29,30], this group has been corroborated in all molecular phylogenetic analyses [9,22,31,32,33,34], but different names have been used to this clade, including T. brasiliensis species-complex [29] and the brasiliensis clade [31]. Barbosa and Costa [35] named a group of Trichomycterus from south-eastern Brazil as the T. travassosi species complex based on coloration alone, but this group has not been corroborated by molecular data [9,32]. More recently, based on osteology and molecular evidence, Costa et al. [32,36] named the T. nigroauratus and T. nigricans groups, and Costa and Katz [25] named the T. reinhardti group, as well as Ochoa et al. [31], based on molecular evidence, named the itatiayae clade (including T. itatiayae and the T. reinhardti group in [25]) and the immaculatus clade. The use of different names for the same clades and the use of misidentified species to name clades have made the intrageneric informal classification of Trichomycterus s.s. confusing. The secondary objective of this paper was to provide an intrageneric classification well supported by both morphology and DNA evidence.

2. Materials and Methods

2.1. Comparative Osteology

This study is primarily based on the examination of specimens previously cleared and stained following Taylor and Van Dyke’s protocol [37] and deposited in the ichthyological collection of the Institute of Biology, Federal University of Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil (see list of specimens in Appendix A). A total of 53 of the 60 valid species of Trichomycterus s.s. were examined, comprising samples of paratypes or topotypes. The analysis also included 33 species of non-Trichomycterus trichomycterines; two species, Listrura tetraradiata Landim and Costa 2002 and Microcambeva ribeirae Costa, Lima and Bizerril 2004, representing the Microcambevinae, the sister group of the remaining subfamilies comprising the TSVSGM-clade, which was supported as a sister to the Trichomycterinae [7]; two species, Copionodon pecten de Pinna 1992 and Trichogenes longipinnis Britski and Ortega 1983, representing the Copionodontinae and Trichogeninae, respectively, which together form the sister group to a clade comprising all other trichomycterids [22,31]; and the nematogenyid Nematogenys inermes (Guichenot 1848), a basal loricarioid catfish taxon.
The comparative analysis focused on bone structure variation, which has been used in the last almost 50 years to infer phylogenetic relationships of trichomycterids [38], as well as to diagnose trichomycterine genera and species (e.g., [12,19,20,21,39,40,41,42]). As a consequence, the considerable amount of available data in the literature on trichomycterine osteology allows more inclusive comparisons. The comparative analysis was directed to qualitative characters potentially diagnosing distinct intrageneric clades; quantitative characters and characters with high variability within different lineages or with a high level of subjectivity were not considered in this analysis. Illustrations were made using a Zeiss Stemi SV 6 stereomicroscope with camera lucida.
Terminology for bones followed Bockmann et al. [20], except for: ‘epibranchial 5 cartilage’, here using ‘ceratobranchial 4 accessory element’ according to Carvalho et al. [43]; ‘urohyal’, here replaced by ‘parurohyal’ following Arratia and Schultze [44]; ‘pleural rib’, here substituted by ‘rib’ following Britz and Bartsch [45] that have provided evidence that there is a single rib type in teleosts. The use of the names antorbital and sesamoid supraorbital here adopted, following Bockmann et al. [20] and Adriaens et al. [46], respectively, deserves some additional explanation due to some recent controversy involving homology and terminology, as below discussed.
The anterior-most bone has been identified as lacrimal [38], tendon-bone infraorbital [19], antorbital [20], and more recently lacrimal-antorbital [47]. In trichomycterines, it consists of a small flat ossification, drop-shaped in a dorsal view, associated with a segment of the infraorbital canal; it is placed close to the base of the nasal barbel externally and the antero-lateral part of the autopalatine internally. Since this bone is placed at the same position as the antorbital bone of basal siluriforms [48], it is here called antorbital following Bockmann et al. [20] and Adriaens et al. [46]. De Pinna et al. [47] found evidence that the antorbital is a compound structure derived from the fusion between the antorbital and the lacrimal. However, evidence was based only on the examination of a single cleared and stained juvenile specimen of T. longipinnis Britski and Ortega 1983, 20.3 mm of standard length, thus needing confirmation since robust evidence of a fusion between these elements is still unavailable [49].
The posterior osseous structure here identified as sesamoid-supraorbital, resulting from the ossification of a ligament between the antorbital and the neurocranium [46], was first equivocally identified as a nasal bone [10]. Since it is not associated with a sensory canal as a true nasal bone, Baskin [38] considered this structure as neomorphic and a synapomorphy of a trichomycterid group (i.e., Trichomycterinae plus Sarcoglanidinae and Glanapteryginae), naming it the fronto-lacrimal tendon bone. Different names for this bone have been used in the subsequent literature, including supraorbital [12], antorbital [50], and tendon-bone supraorbital [19]. More recently, this bone was identified as a sesamoid supraorbital bone [46] and subsequently called the sesamoid supraorbital by several authors [21,36,51]. This rod-shaped bone is present both in the Trichomycterinae and in basal members of the TSVSGM-clade [7,38], but no similar structure is present in basal trichomycterids (i.e., Copionodontinae and Trichogeninae). Two of the three species of Trichogeninae, T. longipinnis and T. beagle de Pinna, Reis and Britski 2020 have a scale-like ossification attached to the dorsal surface of the lateral process of the lateral ethmoid [47] that is not present in the other species of Trichogenes and in any species of the Copionodontinae, the sister group of the Trichogeninae [22,31]. In fact, due to its shape and position, the presence of this bone in those two trichogenine species seems to be a unique condition among trichomycterids and other loricarioids. This scale-like ossification occurring only in trichogenines was first tentatively identified as antorbital and homologous to the rod-shaped sesamoid supraorbital of trichomycterines [50], and recently named the barbular bone [47] and again considered as homologous to the fronto-lacrimal tendon bone sense by Baskin [38] (sesamoid supraorbital). This supposed homology was justified by both bones being positioned between the antorbital and the neurocranium margin and by both not being associated with any head sensory canal. However, only in T. beagle among species of Copionodontinae and Trichogeninae, there is a ligament uniting the antorbital and the barbular bone [47]. On the other hand, these structures have a different shape (scale-like in Trichogenes vs. rod-shaped), and more importantly, they have a different position (i.e., barbular bone associated with the lateral process of the lateral ethmoid in Trichogenes, vs. sesamoid supraorbital associated with the dorsal surface of the autopalatine), suggesting that they are not homologous. Therefore, it would be premature to interpret the barbular bone present only in two species of the clade encompassing copionodontines and trichogenines as homologous to the sesamoid supraorbital of the clade comprising trichomycterines and the TSVSGM-clade, without developmental studies supporting such proposal.
Terminology for minor osteological structures such as processes, bone outgrowths, and articulations, mostly followed Baskin [38], Arratia [41], and Adriaens et al. [46], as described in the text, and for cephalic latero-sensory system following Arratia and Huaquin [48].

2.2. DNA Sequences

The molecular dataset comprised partial sequences of two nuclear genes, myosin heavy chain 6 (MYH6, 543 bp) and recombination activating 2 (RAG2, 821 bp), and two mitochondrial genes, cytochrome c oxidase subunit I (COI, 522 bp) and cytochrome b (CYTB, 1088 bp). Sequences were first obtained in previous studies focusing on trichomycterine phylogeny [9,25,32,33,34], in which sequenced specimens were, whenever possible, collected in the species type locality. Amplification of the target DNA fragments was made through the polymerase chain reaction (PCR) method, using the primers MHRAG2-F1 and MHRAG2-R1 [52]; RAG2 TRICHO F and RAG2 TRICHO R [7]; RAG2 MCF and RAG2 MCR [53]; myh6_F459 and myh6_R1322 [54]; MYH6 TRICHO F and MYH6 TRICHO R [7]; Cytb Siluri F and Cytb Siluri R [55]; L5698-ASN and H7271-COI [55]; and FISHF1 and FISHR1 [56]. The analyses were complemented with sequences obtained from GenBank; a complete list of species and GenBank accession numbers appears in Appendix B. Alignment was conducted for each gene set using Clustal W algorithm [57] implemented in MEGA 7.0 [58]; no gap was found in the analyzed alignments.

2.3. Phylogenetic Analyses

The phylogenetic analyses comprised species that were examined in the osteological comparative analysis and had available DNA data, including 44 species of Trichomycterus s.s. and 21 outgroups (see Apenddix B for a list of species used in the phylogenetic analyses). Fifty-two characters rsulted from the osteological comparative analysis (see above); a list of characters, formulated according to Sereno [59], is provided in the Appendix C, and the distribution of character states among taxa appears in the data matrix of the Appendix D. Osteological characters were combined to a set of gene fragments more commonly used in phylogenetic studies on trichomycterines (see DNA sequences above), a total of 2974 bp. Molecular data were partitioned according to the codon position for each gene, as well as morphological data were placed in a separate partition. The best-fitting models of molecular evolution for each partition was found using the Bayesian information criterion (BIC) of ModelFinder [60], implemented in IQ-TREE 1.6.11 [61], with partition models described by Chernomor et al. [62]; the list of partitions and their respective models of nucleotide substitution are provided in the Appendix E. The concatenated dataset, a total of 3026 characters for 65 taxa, was first analyzed using IQ-TREE for Maximum Likelihood (ML), applying three methods for assessing the reliability of internal branches: the Shimodaira-Hasegawa-like procedure support (SH-aLRT) [63], the Bayesian-like transformation of SH-aLRT support (aBayes) [64] and the ultrafast bootstrap support (UFBoot) [65,66], using 1000 replicates and default parameters as implemented in IQ-TREE. The concatenated dataset was also analyzed using Maximum Parsimony (MP) methods performed with TNT 1.1 [67]. The phylogenetic analysis was rooted in the nematogenyid N. inermis. The search for most parsimonious trees was conducted using the ‘traditional’ search algorithm and setting random taxon-addition replicates to ten, tree bisection–reconnection branch swapping, multitrees in effect, collapsing branches of zero length, characters equally weighted, and a maximum of 1000 trees saved in each replicate. Character states were treated as unordered. Branch support was assessed by bootstrap analysis [68], using a heuristic search with 1000 replicates and the same settings used in the MP search. Unambiguous diagnostic character states for the main lineages of Trichomycterus were obtained by character state optimization of the combined analysis tree using TNT 1.1.

2.4. Taxonomic Accounts

Subgenera appeared following a phylogenetic order, according to Figure 1. Diagnoses comprised osteological apomorphic features supporting the taxon, followed by combinations of external morphological features additionally distinguishing the taxon from other taxa; the abbreviation ‘chast’ means character state, that is numbered according to Appendix C.

3. Results

3.1. Comparative Osteology and Phylogeny

Fifty-two osteological characters with informative variability were obtained from the comparative analysis (see Appendix C for list of characters and Appendix D for distribution of character states among terminal taxa). The ML analysis generated a phylogenetic tree with most nodes reaching high support values (Figure 1). The single most parsimonious tree generated by the MP analysis was similar to the ML tree, but with some nodes being weakly supported (see list of support values for each node of Figure 1 in Table 1). In both analyses, the monophyly of Trichomycterus s.s. was corroborated (SH-aLRT support of 85.1%, aBayes support of 0.96, ultrafast bootstrap support of 92% for the ML analysis, and a bootstrap of 89% for the MP analysis).
Like in previous studies [9,32], T. giganteus Lima and Costa 2004, here placed in a separate subgenus, appeared as sister to a clade containing all other congeners, besides exhibiting ten unique osteological apomorphic character states, first described here (see taxonomic accounts below). The clade comprising all species of Trichomycterus s.s., except T. giganteus, contained five main subclades supported by high values in all analyses (Figure 1, Table 1), which were below recognized as subgenera.

3.2. Taxonomic Accounts

3.2.1. Megacambeva, New Subgenus

LSID: urn:lsid:zoobank.org:act:DD5D2BBB-A0E2-4D6F-96F1-229A811ADCE7

Type species. Trichomycterus giganteus Lima and Costa 2004.
Diagnosis. Megacambeva differs from all other subgenera of Trichomycterus s.s. in possessing the following apomorphic conditions: presence of a short osseus ridge on the dorsal surface of the autopalatine, between the lateral margin and the middle portion of the bone (chast.2.1, Figure 2A; vs. absence of a similar ridge, Figure 2B–F); a posteriorly directed latero-posterior process of the autopalatine (chast.4.2, Figure 2A; vs. laterally or latero-posteriorly directed, Figure 2B–F); presence of a prominent ridge on the dorsal surface of the shell-like articular facet for the lateral ethmoid, terminating in a process latero-dorsally directed and connected by ligament to a robust sesamoid supraorbital (chast.8.1, Figure 2A; vs. never a similar structure, Figure 2B–F); presence of a deep concavity in the hyomandibular outgrowth reaching the ventral portion of the bone outgrowth (chast.13.3, Figure 3A; vs. absence, Figure 3B–F); strongly curved distal portion of largest internal-most opercular and interopercular odontodes, with their tips forming an angle of about 90° with its main axis (chast.15.1, Figure 3A; vs. nearly straight or only slightly curved, Figure 3B–F); a prominent trapezoidal process on the lateral margin of the lateral ethmoid, immediately posterior to the articular zone with the autopalatine (chast.30.1, Figure 2A; vs. process absent, Figure 2B–F); a slender Weberian capsule, subtly narrowing laterally to form a long lateral extremity (chast.44.1; Figure 4A; vs. broad, pear-like, abruptly narrowing laterally to form a short lateral extremity, Figure 4B–D); a hypertrophied tree-shaped supralateral process on the scapulo-coracoid (chast.45.1; Figure 5A; vs. needle shaped and small, Figure 5B); and three anterior processes in the pelvic bone (chast.51.1, Figure 6A; vs. two, Figure 6B–G). In addition, the only species included in Megacambeva, T. giganteus is unique among congeners by reaching a larger size, surpassing 200 mm SL (vs. usually reaching about 50–75 mm SL as maximum adult size, rarely reaching about 100–120 mm SL), and by having a unique dorsal fin morphology, that is deeper than long (vs. longer than deep, Figure 1). Megacambeva is also distinguished from all other subgenera by the following combination of character states: nine or ten pectoral-fin rays (vs. six to eight in Cryptocambeva, Humboldtglanis, and Paracambeva); anal-fin origin posterior to dorsal-fin base (vs. anal-fin origin in vertical through posterior half of dorsal-fin base in Cryptocambeva, Humboldtglanis, Paracambeva, and Psammocambeva); long maxillary barbel, its tip reaching the anterior third of the pectoral fin (vs. reaching anterior margin of pectoral-fin base or shorter in Cryptocambeva, Humboldtglanis, Paracambeva, and Trichomycterus); basal portion of maxillary barbel not distinctively widened (vs. widened in Psammocambeva); and jaw teeth always sharply pointed (vs. at least larger adults with incisiform teeth in Trichomycterus).
Included taxa. A single species, T. giganteus.
Etymology. From the Greek mega (large), and cambeva, a popular name for trichomycterids in south-eastern Brazil, referring to the large size of the only included species. Gender feminine.
Distribution and ecological notes. The only included species, T. giganteus, is known from a single locality in the Rio Guandu-Mirim, Rio Guandu basin, an isolated small coastal basin in south-eastern Brazil. Adult specimens were found where the river form small lakes below waterfalls, close to the river bottom, and below large rocks, about 200 cm deep or slightly more. Specimens were eventually seen swimming between bottom rocks during daylight, suggesting some diurnal activity.

3.2.2. Paracambeva, New Subgenus

LSID: urn:lsid:zoobank.org:act:F5037571-D95D-4091-880B-9E598AF9ED9F

Type species. Trichomycterus itatiayae Miranda Ribeiro 1906.
Diagnosis. Paracambeva is supported by two apomorphic conditions: the dorsal process of the interopercle being close to the anterior margin of the odontode patch (chast.17.1, Figure 3B; vs. dorsal process more posterior placed, Figure 3A,C–F; independently occurring in Cambeva and Scleronema according to the analysis) and a slender parapophysis of the second free vertebrae, since its proximal portion to the distal portion (chast.38.1, Figure 7C; vs. robust, Figure 7D–F). Species of Paracambeva also differ from all other species the Trichomycterus s.s. by having a unique color pattern consisting of a continuous black stripe between the snout and the caudal-fin base, becoming dispersed and spotted in larger specimens (Figure 1) [25] (Figure 1 and Figure 2). Paracambeva is also distinguished from all other subgenera of Trichomycterus s.s. by the following combination of character states: six or seven pectoral-fin rays (vs. eight in Humboldtglanis, eight or nine in Psammocambeva and Trichomycterus, and nine or ten in Megacambeva); anal-fin origin in vertical through the middle or posterior portion of the dorsal-fin base (vs. posterior to end of the dorsal-fin base in Megacambeva); basal portion of maxillary barbel not distinctively widened (vs. widened in Psammocambeva); distal tip of the maxillary barbel not reaching the pectoral-fin base (vs. reaching first pectoral-fin base third in Megacambeva); eye small, iris with an indistinct or small light area (vs. iris light area broad in Psammocambeva).
Included taxa. Paracambeva comprises two main lineages. One lineage, containing only T. itatiayae, is characterized by the following apomorphic character states: a rudimentary and curved latero-posterior process of the autopalatine (chast.3.1, Figure 2B; vs. well-developed, about straight, Figure 2A,C–F); a deep concavity on the metapterygoid accommodating an expansion of the antero-dorsal process of the quadrate (chast. 11.1, Figure 3B; vs. never a similar morphology, Figure 3A,C–F); a deep anterior outgrowth of the hyomandibula, with the dorsal margin nearly horizontal anteriorly and a distinctive U-shaped concavity posteriorly (chast. 13.1, Figure 3B; vs. never a similar morphology, Figure 3A,C–F); a medially directed antero-dorsal extremity of the lateral ethmoid (chast.27.2, Figure 2B; vs. anteriorly or laterally directed, Figure 2A,C–F); and the presence of a small process close to the cartilage supporting fin rays on the postero-medial portion of the pelvic bone (chast.52.2, Figure 6C; vs. absence, Figure 6A,B,D–G). The other lineage, the T. reinhardti species group, contains ten species: T. anaisae Katz and Costa 2021, T. funebris Katz and Costa 2021, T. humboldti Costa and Katz 2021, T. ingaiensis Katz and Costa 2021, T. luetkeni Katz and Costa 2021, T. pauciradiatus Alencar and Costa 2006, T. piratymbara Katz, Barbosa and Costa 2013, T. reinhardti (Eigenmann 1918), T. sainthilairei Katz and Costa 2021, and T. septemradiatus Katz, Barbosa and Costa 2013. The T. reinhardti species group is supported by the following apomorphic character states: a lengthened ventral flap of the autopalatine articular facet for the lateral ethmoid (chast.7.1, Figure 2I; vs. short or rudimentary, Figure 2J); infraorbital canal not attached to antorbital (chast.23.1, Figure 2G; vs. attached, Figure 2H); and a rudimentary pelvic girdle, with a narrow proximal region, without vestiges of the antero-medial and posterior processes (chast.47.1, Figure 6B; vs. pelvic girdle well-developed, Figure 6A,C–G). Species of the T. reinhardti group are also distinguished from T. itatiayae by having pointed jaw teeth (vs. incisiform).
Distribution and ecological notes. Trichomycterus itatiayae is endemic to the upper Rio Paraíba do Sul basin, south-eastern Brazil; it was found associated with leaf litter, occasionally swimming above it during daylight [69]. The T. reinhardti group occurs in a wide geographical range, including the upper Rio Paraná, upper Rio São Francisco, upper Rio Doce, and middle Rio Paraíba do Sul basin, south-eastern Brazil. During daylight field works, species of Paracambeva are found hidden within roots of marginal vegetation in small shallow streams, indicating to have nocturnal habits [25].
Etymology. The name Paracambeva is derived from the Greek prefix para, meaning resembling, and cambeva, a popular name for trichomycterids in south-eastern and southern Brazil and a nominal trichomycterine genus, in reference to the superficial resemblance with some species of Cambeva (e.g., Cambeva poikilos (Ferrer and Malabarba 2013)). Gender feminine.

3.2.3. Subgenus Trichomycterus Valenciennes 1832

Type species. Trichomycterus nigricans Valenciennes 1832.
Diagnosis. The subgenus Trichomycterus is supported by three apomorphic character states: the presence of a posterior expansion in the metapterygoid (chast.10.1, Figure 3D; vs. absence, Figure 3A–C,E,F); a long lateral process of the sphenotic-prootic-pterosphenoid complex (chast.32.1, Figure 8A; vs. short, Figure 8B); and the presence of an expansion on the antero-distal portion of the second free vertebra parapophysis, overlapping the adjacent rib that is widened in its sub-proximal portion (chast.39.1, Figure 7D; vs. absence of expansion, rib not widened in its sub-proximal portion, Figure 7C,E–G). The subgenus Trichomycterus is distinguished from all other subgenera of Trichomycterus s.s. by having the opercular odontode patch more posteriorly placed, with its posterior limit reaching a vertical through the pectoral-fin base (vs. anterior to pectoral-fin base). The subgenus Trichomycterus also differs from all other subgenera of Trichomycterus s.s. by the following combination of character states: eight or nine pectoral-fin rays (vs. six or seven in Cryptocambeva and Paracambeva); opercular odontodes transversely arranged (vs. diagonally in Cryptocambeva and Humboldtglanis); dorsal fin longer than deep (vs. deeper than long in Megacambeva); basal portion of maxillary barbel not distinctively widened (vs. widened in Psammocambeva).
Included taxa. Eight valid species in two groups: the T. nigricans group, including T. caipora Lima, Lazzarotto, and Costa 2008, T. immaculatus (Eigenmann and Eigenmann 1889), T. nigricans, and T. santaeritae (Eigenmann 1918), supported by the presence of an enlarged posterior process of the maxilla (chast.22.1, Figure 2C; vs. not enlarged, Figure 2A,B,D–G); and the T. nigroauratus group, including T. maculosus Barbosa and Costa 2010, T. nigroauratus Barbosa and Costa 2008, and T. quintus Costa 2020, supported by the presence of a folded laminar expansion of the lateral ethmoid border, just above the articular facet for the autopalatine (chast.26.1, Figure 2D; vs. absence, Figure 2A–C,E–G); and an elongate pelvic bone, with a narrow and straight posterior process (chast.48.1, Figure 6D; vs. never a similar shape, Figure 6A–C,E–G). Species of the T. nigricans group are also distinguished from species of the T. nigroauratus group by having eight pectoral-fin rays (vs. nine) and posterior margin of the caudal fin straight to slightly convex (vs. concave at least in juveniles).
Distribution and ecological notes. Species of the subgenus Trichomycterus are endemic to an area comprising the Rio Paraíba do Sul basin and the neighboring smaller coastal basins. Most species have cryptical habits during the day, suggesting that they are nocturnal, but T. santaeritae is a specialized diurnal psammophilic species [32,36].

3.2.4. Psammocambeva, New Subgenus

LSID: urn:lsid:zoobank.org:act:4ED967A8-D2DB-43F1-9918-6A3384652165

Type species. Trichomycterus travassosi Miranda Ribeiro, 1949.
Diagnosis. Psammocambeva is supported by the presence of a long maxilla, that is longer than the premaxilla (chast.20.1, Figure 2F; vs. shorter, Figure 2A–E,G,H), a derived condition independently acquired in a subclade of the subgenus Trichomycterus. Psammocambeva is distinguished from other subgenera of Trichomycterus s.s. by the presence of a widened basal portion of the maxillary and rictal barbels (Figure 9B; vs. not widened, Figure 9A,C,D) and a broad ventral expansion of the light portion of the iris (Figure 9B; vs. light portion of the iris not ventrally widened, Figure 9A,C,D). Distinguished from Paracambeva also by the anterior segment of the infraorbital latero-sensory canal being always present and close to the nostrils (vs. separated by an interspace from the nostrils when present); from Cryptocambeva and Paracambeva by the presence of eight or nine pectoral-fin rays (vs. six or seven); from Cryptocambeva and Humboldtglanis by the opercular odontodes being transversely arranged, vs. diagonally); from Humboldtglanis by the absence of white spots on the flank (vs. presence); from Trichomycterus by the opercular odontode patch not extending posteriorly above the pectoral-fin base (vs. extending); and from Megacambeva by the dorsal fin being longer than deep (vs. deeper than long).
T. melanopygius Reis, dos Santos, Britto, Volpi, and de Pinna 2020, T. pradensis Sarmento-Soares, Martins-Pinheiro, Aranda, and Chamon 2005, and T. tete Barbosa and Costa 2010, is characterized by two apomorphic conditions: a shallow anterior hyomandibular outgrowth (chast.12.1, Figure 3C; vs. deep, Figure 3A,B,D–G); and an expanded ventral preopercular flap (chast.19.1, Figure 3C; vs. short, Figure 3A,B,D–G). Three species not available for the present study, showing great external morphological similarity, are probably members of this clade: T. itacambirussu Triques and Vono 2004, T. jequitinhonhae Triques and Vono 2004, T. landinga Triques and Vono 2004, and T. trefauti Wosiacki 2004. The T. travassosi group, comprising T. auroguttatus Costa 1992, T. cf. alternatus (Eigenmann 1917), T. caudofasciatus Alencar and Costa 2004, T. gasparini Barbosa 2013, T. goeldii Boulenger 1896, T. jacupiranga Wosiacki and Oyakawa 2005, T. longibarbatus Costa 1992, T. macrophthalmus Barbosa and Costa 2012, T. mimosensis Barbosa 2013, T. pantherinus Alencar and Costa 2004, T. puriventris Barbosa and Costa 2012, and T. travassosi Miranda Ribeiro 1949, is supported by: a widened lateral margin of the lateral ethmoid, (chast.31.1, Figure 2F; vs. not widened, Figure 2A–E).
Trichomycterus astromycterus Reis, de Pinna, and Pessali 2020, not available to the present study, probably is a member of the T. travassosi group. Although considered to be possibly closely related to the Chilean monotypic genus Bullockia [70], T. astromycterus exhibits the derived character states supporting Psammocambeva and the T. travassosi group, as well as three synapomorphies supporting a subclade comprising T. cf. alternatus, T. auroguttatus, and T. goeldii: a long autopalatine postero-lateral process, its length nearly equal or slightly longer than the autopalatine longitudinal length excluding the postero-lateral process (chast.5.1, Figure 2F; vs. distinctively shorter, Figure 2A–E); a slightly folded maxilla (chast.21.1, Figure 2F; vs. curved or straight, Figure 2A–E); and the anterior cranial fontanel represented by a minute aperture (chast.35.1, Figure 8B; vs. broad aperture, Figure 8A), besides all having a protruded orbit (Figure 9B).
Etymology. From the Greek, psammos (sand), and cambeva, a popular name for trichomycterids in south-eastern and southern Brazil and a nominal trichomycterine genus, an allusion to the psammophilic habits of the type species and other included species. Gender feminine.
Distribution and ecological notes. Psammocambeva occupies the entire geographical distribution of Trichomycterus s.s., from the Rio de Contas basin in north-eastern Brazil to the rivers associated with the Baía de Paranaguá in southern Brazil. Field studies indicate that species of Psammocambeva are always found associated with gravel or sand substrate [35], but at least some species (e.g., T. auroguttatus and T. cf. alternatus) are specialized psammophilic species, often found completely buried in sand stretches on the middle of river bottom [13]. At least T. pradensis has migrating behavior, which is supported by field studies conducted in February 2014, when hundreds of juvenile specimens of this species, about 20 mm of total length, were seen forming a continuous upstream flow in the lower Rio Jucuruçu (16°23′34” S 39°17′09” W), eastern Brazil (person. observ.).

3.2.5. Humboldtglanis, New Subgenus

LSID: urn:lsid:zoobank.org:act:09886ED2-C1BC-4A84-8824-07E6EEA8B510

Type species. Trichomycterus albinotatus Costa 1992.
Diagnosis. Species of Humboldtglanis are distinguished from all other congeners by the following apomorphic features: a slightly convex medial margin of the autopalatine in larger individuals (above about 45 mm SL; chast.6.1, Figure 2H; vs. concave), steep anterior and posterior portions of the dorsal margin of the hyomandibula anterior outgrowth, converging to a pronounced V-shaped notch (chast.13.1, Figure 3E; vs. outgrowth never with similar morphology, Figure 3A–D,F), and a sharp process in the latero-posterior margin of the epioccipital (chast.34.1, Figure 4E; vs. process absent, Figure 4A–C). Humboldtglanis is also distinguished from other subgenera, except Cryptocambeva, by the following apomorphic features: presence of a long and narrow ridge on the dorsal surface of the autopalatine, close to its lateral margin (chast.1.1, Figure 2E,H; vs. absence, Figure 2A–D,F,G); an oblique arrangement of odontodes of the basal portion of the opercular odontode patch (chast.14.1, Figure 3E; vs. vertical, Figure 3A–D,F); ventral surface of the lateral margin of the mesethmoid ventrally folded around the vomer margin (chast.25.1, Figure 2J; vs. not folded, Figure 2I); lateral ethmoid medially separated from its symmetrical homologous (chast.28.1, Figure 2E; vs. in contact, Figure 2A–D,F); presence of a lateral expansion of the lateral ethmoid margin close to the sesamoid supraorbital (chast.29.1, Figure 2E; vs. absence, Figure 2A–D,F); the presence of a small notch in the posterior margin of the parapophysis of the second free vertebra, in an area close to the proximal extremity of the adjacent rib (chast.40.1, Figure 7E; vs. absence, Figure 7A–D,F); and a rudimentary posterior process of the pelvic bone (chast.49.1, Figure 6E,F; vs. well-developed, Figure 6A,C,D,G). Species of Humboldtglanis are also distinguished from other congeners by the presence of rows of small white spots along the flank in specimens about 50 mm SL or less (Figure 1; vs. white spots absent). Humboldtglanis is also distinguishable from other subgenera of Trichomycterus s.s. by the following combination of characters: the anal-fin origin is placed in a vertical through the posterior portion of the dorsal-fin base (vs. anal-fin origin posterior to the dorsal-fin base in Megalebias), eight pectoral-fin rays (vs. six or seven in Cryptocambeva and Paracambeva, nine or ten in Megacambeva), dorsal fin longer than deep (vs. deeper than long in Megacambeva, Figure 1); presence of an anterior infraorbital canal attached to the antorbital, externally close to nostrils (vs. anterior infraorbital canal when present is not attached to the antorbital and is externally separated from nostrils by an interspace in Paracambeva); never having a continuous black stripe between the snout and the caudal-fin base, becoming disperse and spotted in larger specimens (vs. always present in Paracambeva); orbital diameter about 12–16% of the head length in specimens between about 40 and 60 mm SL (vs. about 7–11% of the head length in Cryptocambeva), by having the basal portion of maxillary barbel not distinctively widened (vs. widened in Psammocambeva); the light portion of iris not extending ventrally (vs. broad, extending ventrally in Psammocambeva, Figure 9); and the posterior margin of the opercular patch of odontodes placed in a vertical anterior to pectoral-fin base (vs. in vertical through the pectoral-fin base in Trichomycterus).
Included taxa. Two species, T. albinotatus and T. vitalbrazili Vilardo, Katz, and Costa 2020.
Etymology. The name Humboldtglanis was used in honor of the Prussian naturalist Friedrich Wilhelm Heinrich Alexander von Humboldt (1769–1859), for his valuable and pioneering contribution in studies on distribution, ecology, and conservation of mountain organisms; the name glanis, is from the ancient Greek and is commonly used for generic catfish names. The name is also an allusion to several species of Humboldtglanis only inhabiting mountain rivers 1000 m above sea level. Gender masculine.
Distribution and ecological notes. Humboldtglanis is endemic to the Rio Paraíba do Sul basin, south-eastern Brazil, occurring in areas about 1100 m above sea level. Field observations indicate that species are diurnal, swimming actively during daylight a few centimeters above gravel substrate and small rocks, but larger specimens about 60 mm SL or more, are mostly found hidden among stones, only sporadically swimming around this habitat [13,33].

3.2.6. Cryptocambeva, New Subgenus

LSID: urn:lsid:zoobank.org:act:E0BE3FF5-ABAE-4881-9875-5FA5C23FE2C4

Type species. Trichomycterus mirissumba Costa 1992.
Diagnosis. Species of Cryptocambeva are distinguished from all other congeners by the following apomorphic features: a rounded, narrow, and elongated extremity of the pterotic lateral process (chast.33.2, Figure 4C; vs. pterotic lateral process truncate and not elongated, Figure 4A,B,D), a small posttemporo-supracleithrum, resulting in a broad interspace between the posttemporo-supracleithrum and adjacent bones, and a short postero-medial process attached on the distal portion of the Weberian capsule (chast.46.1, Figure 4C; vs. interspace narrow, postero-medial process attaching on the proximal portion of the Weberian capsule, Figure 4A,B,D). Species of Cryptocambeva also differs from all other congeners by having a distinctively narrowed area adjacent to the base of the anterior processes of the pelvic bone (chast.50.1, Figure 6F), but this character state is not applicable to diagnose one species T. candidus (Miranda Ribeiro 1949), in which pelvic fin and girdle are absent. Cryptocambeva is also distinguished from other subgenera, except Humboldtglanis, by the following apomorphic features: presence of a long and narrow ridge on the dorsal surface of the autopalatine, close to its lateral margin (chast.1.1, Figure 2E,H; vs. absence, Figure 2A–D,F,G); an oblique arrangement of odontodes of the basal portion of the opercular odontode patch (chast.14.1, Figure 3E; vs. vertical, Figure 3A–D,F); ventral surface of the lateral margin of the mesethmoid ventrally folded around the vomer margin (chast.25.1, Figure 2J; vs. not folded, Figure 2I); lateral ethmoid medially separated from its symmetrical homologous (chast.28.1, Figure 2E; vs. in contact, Figure 2A–D,F); presence of a lateral expansion of the lateral ethmoid margin close to the sesamoid supraorbital (chast.29.1, Figure 2E; vs. absence, Figure 2A–D,F); the presence of a small notch in the posterior margin of the parapophysis of the second free vertebra, in an area close to the proximal extremity of the adjacent rib (chast.40.1, Figure 7E; vs. absence, Figure 7A–D,F); and a rudimentary posterior process of the pelvic bone (chast.49.1, Figure 6E,F; vs. well-developed, Figure 6A,C,D,G). Species of Cryptocambeva are distinguished from all other congeners by a color pattern consisting of minute dark brown dots scattered over all the body (Figure 1; vs. never a similar color pattern). Species of Cryptocambeva are also distinguishable from species of all other subgenera by the following combination of character states: six or seven pectoral-fin rays (vs. nine or ten in Megacambeva, eight in Humboldtglanis, eight or nine in Psammocambeva and Trichomycterus), the anal-fin origin in a vertical through the posterior portion of the dorsal-fin base (vs. anal-fin origin posterior to the dorsal-fin base in Megacambeva), dorsal fin longer than deep (vs. deeper than long in Megacambeva); never having a continuous black stripe between the snout and the caudal-fin base, becoming disperse and spotted in larger specimens (vs. always present in Paracambeva); jaw teeth always sharply pointed (vs. at least larger adults with incisiform teeth in Trichomycterus); the basal portion of maxillary barbel not distinctively widened (vs. widened in Psammocambeva); and an inconspicuous light portion of the iris (vs. broad in Psammocambeva).
Included taxa. Cryptocambeva comprises fifteen valid species: T. brasiliensis Lütken 1874, T. brunoi Barbosa and Costa 2010, T. candidus, T. claudiae Barbosa and Costa 2010, T. fuliginosus Barbosa and Costa 2010, T. maracaya Bockmann and Sazima 2004, T. mariamole Barbosa and Costa 2010, T. mimonha Costa 1992, T. mirissumba, T. macrotrichopterus Barbosa and Costa 2010, T. novalimensis Barbosa and Costa 2010, T. pirabitira Barbosa and Azevedo-Santos 2012, T. potschi Barbosa and Costa 2003, T. rubiginosus Barbosa and Costa 2010, T. vermiculatus (Eigenmann 1917), and at least three undescribed species. Trichomycterus argos Lezama and Triques e Santos 2012, not available for the present study, was considered to belong to the T. brasiliensis group by Lezama et al. [71], but the morphology of the neurocranium and adjacent bones schematically illustrated in its original description [71] (Figure 3) suggests that is not a member of this group. In this illustration, the two derived conditions relative to the pterotic and posttemporo-supracleithrum seem to be not present.
Etymology. From the Greek cryptos (hidden) and cambeva, a popular name for trichomycterids in south-eastern and southern Brazil and a nominal trichomycterine genus, referring to the cryptic habits of species of this group during daylight collections (see below). Gender feminine.
Distribution and ecological notes. Species of Cryptocambeva occur in a broad area of south-eastern Brazil, encompassing the upper courses of the Rio São Francisco, Rio Itabapoana, Rio Paraíba do Sul, and Rio Paraná basins, besides small isolated coastal basins emptying in the Baía de Sepetiba. Field studies indicate that species of the T. brasiliensis group are nocturnal, with adults being found deeply buried in river banks and juveniles in leaf litter deposits during the day [13,28].
This section may be divided into subheadings. It should provide a concise and precise description of the experimental results, their interpretation, as well as the experimental conclusions that can be drawn.

4. Discussion

4.1. Phylogeny

The phylogenetic tree obtained in the present analysis was similar to those generated when using only molecular data [32,33,34], supporting the same intrageneric clades here recognized as subgenera and species groups. The only exception was the T. pradensis group, here supported as monophyletic, but with relatively low support values, whereas two lineages formed a paraphyletic lineage in previous studies, but also with weakly supported nodes. These discrepant results are due to the inclusion of unique osteological character states herein assigned to the T. pradensis group (see taxonomical accounts above).

4.2. Morphological Diversity of Osteological Structures

A high morphological diversity of osteological structures in different lineages of Trichomycterus s.s. was herein first recorded and described. This diversity, mainly concentrated in bones of the mesethmoidal region and jaw suspensorium, is comparable or superior to that found among closely related genera of other trichomycterid groups. For example, the morphological divergence among the subgenera of Trichomycterus s.s. and included groups is conspicuously greater than that reported to distinguish the trichomycterine genera Bullockia and Hatcheria [12], and the copionodontine genera Copionodon de Pinna 1992 from Glaphyropoma de Pinna 1992 [72].
Although field reports on trichomycterines from eastern Brazil are sparse and limited to a few notes in taxonomical papers, some data suggest that the high morphological diversity here reported for Trichomycterus s.s. is possibly related to some ecological specializations found in different lineages. Trichomycterus giganteus, the only species of Megacambeva and supported as sister to the clade comprising all other congeners (Figure 1), highly differs from other taxa of the CST-clade by unique osteological character states (see results above). However, T. giganteus also differs from other congeners by its larger size and habitat. This species reaches about 200 mm of standard length (SL) [73], a size never recorded for any member of the CST-clade, which rarely reach about 120 mm SL. Trichomycterus giganteus is found in small lake-like areas formed between river waterfalls, where larger specimens may be seen swimming about 200 cm below the water surface (person. observ.). Other congeners are typically found in fast-flowing, shallow streams, in depths about 100 cm or less. Interestingly, a few other trichomycterine taxa reaching large size are found in Andean lakes, such as Eremophilus mutisii Humboldt 1805 reaching about 300 mm SL and Trichomycterus rivulatus Valenciennes 1846 reaching about 350 mm SL [11], suggesting that life in lacustrine habitats may favor the development of larger sizes.
Some sister lineages seem to exhibit divergent ecological specializations. Within Paracambeva, T. itatiayae has diurnal habits and is occasionally observed swimming on the river bottom during daylight, close to leaf litter [69], thus differing from species of the sister group, the T. reinhardti species group, that are only found buried in the marginal vegetation of small shallow streams during daylight collections [25]. Similarly, species of Cryptocambeva are typical nocturnal catfishes, with adult specimens found deeply buried in riverbanks during daylight field studies, whereas juveniles are often found buried in leaf litter [13,28,30]. This behavior highly contrasts with the diurnal activity recorded for juveniles and smaller adults of species of Humboldtglanis [13,33], the sister group of Cryptocambeva. In the upper Rio Preto drainage, where populations of five species of Trichomycterus have been observed in the field by the author since 1979, including monthly field observations in the period between 2017 and 2020, T. albinotatus (subgenus Humboldtglanis) was easily seen actively swimming just above the gravel substrate during daylight. On the other hand, the sympatric species T. mirissumba (subgenus Cryptocambeva) was found hidden in holes below the marginal vegetation during daylight but commonly fished at night by the local people in any part of the river bottom, making obvious its nocturnal habits. These observations are consistent with sporadic field observations involving other species of both subgenera [28,30,33]. Interestingly, in species of Cryptocambeva, the eye is smaller and darker, without a conspicuous light iris (Figure 9D), contrasting with the larger eye with light iris area around pupil in Humboldtglanis (Figure 9C), conditions probably related to their nocturnal and diurnal habits, respectively. The other sympatric congeners are also equally specialized, with T. auroguttatus, a psammophilic species of Psammocambeva showing high diurnal activity (Figure 9B), and T. quintus, a typically nocturnal species of the subgenus Trichomycterus, only found buried into the bottom leaf litter among rocks during the daytime, in places with strong water flow (Figure 9A) [32].
Species of the subgenera Psammocambeva and Trichomycterus apparently have more variability regarding habitat preferences. Species of the latter subgenus typically have predominant overall dark brown to black coloration, which is probably related to their cryptic habits during daylight [32]. Species of the T. nigroauratus group have been reported to be associated with the bottom leaf-litter [32,69], and most species of the T. nigricans group are commonly found below large rocks during day light [74], but T. santaeritae, a species of the T. nigricans group, highly differs by having lighter coloration (i.e., light yellow with dark brown spots), is diurnal and psammophilic [36]. Similarly, field studies have indicated different habitats preferences for species of Psammocambeva, with many having diurnal habits [13,35,75] and some others nocturnal [76]. Most species of this clade have been found associated with gravel substrate [35,75], but some species such as T. auroguttatus are highly associated to sandy bottom [13], exhibiting a relatively large eye that is slightly dorsally protruded (Figure 6B). Field studies have shown that T. auroguttatus has an intense diurnal activity, being usually found swimming close to sandy stretches on the river bottom, in parts with intense waterflow; when disturbed, specimens quickly bury into the sand, about 3–5 cm below sand surface (person. observ. 2017–2020). However, detailed field studies on other species of Psammocambeva are necessary to make some inferences about possible ecological specializations.

4.3. CST-Clade and Trichomycterus s.s. Diagnosis

Using criteria traditionally accepted for genus delimitation, such as monophyly, morphological gaps, and ability to discriminate, it would be justifiable to divide Trichomycterus s.s. in different genera. However, in order to preserve the nomenclatural stability of included species that are consistently placed in this genus for a long time, the option here adopted was to divide Trichomycterus s.s. in subgenera. The morphological gaps found between Trichomycterus s.s. subclades was compatible with the relatively long genetic distances found among these subclades [32] (Figure 1). However, no unique morphological character state was found to be synapomorphic for Trichomycterus s.s. On the other hand, the comparative osteological analysis provided some evidence relative to vertebra morphology supporting both the CST-clade and the clade comprising Cambeva and Scleronema.
All taxa belonging to the CST-clade have the parapophysis main axis of the second free vertebra postero-laterally directed (chast.37.1; Figure 7B–F), instead of being more laterally directed as in other trichomycterines here examined (Figure 7A). However, a supposedly similar postero-laterally directed parapophysis may be convergently present in other trichomycterines not examined in this study since reconstruction of the Colombian trichomycterine Rhizosomichthys totae (Miles 1942) [42] (Figure 2C) showed a similar morphology.
Species of Cambeva and Scleronema differ from species of Trichomycterus s.s. by having a branched parapophysis of the first free vertebra, with a dorsal branch in contact with the dorsal surface of the articular zone of the first rib, and a ventral branch ventrally supporting the proximal extremity of the rib (chast.36.1; Figure 7B), instead of being unbranched as in Trichomycterus s.s. (Figure 7C–F) and other trichomycterids (Figure 7A), and by the morphology of the parapophysis of the third free vertebra that is posteriorly directed (chast.42.1; Figure 7B), instead of being postero-laterally directed as in other trichomycterines (Figure 7A,C–F). It is important to note that the latter condition, in which the whole parapophysis is posteriorly directed with its main axis reaching a position nearly parallel to the vertebral column axis, differs from that occurring in some species of Ituglanis, in which the parapophysis is curved, and only its extremity is posteriorly directed [77] (Figure 2B). Therefore, the combination of an apomorphic postero-laterally directed parapophysis main axis of the second free vertebra and the plesiomorphic unbranched parapophysis of the first free vertebra and a postero-laterally directed parapophysis of the third free vertebra would tentatively characterize Trichomycterus s.s.

5. Conclusions

The Trichomycterinae has been considered a problematic taxon (see introduction above), but recent studies are quickly changing this scenario. Major advances have resulted from studies on phylogenetic relationships [9,22,31,32], but some problems were not still addressed. The present study provides morphological evidence supporting and making it possible to distinguish between Trichomycterus lineages previously supported only by molecular data, thus allowing future unequivocal placement of new species without molecular data. Furthermore, this study has shown that osteological characters combined with molecular data may be useful to consistently delimit and distinguish between trichomycterine groups that cannot be properly distinguished using only external morphological features. More importantly, this integrative approach sheds light upon the way of solving still persistent problems in trichomycterine systematics, including a formal generic placement for the numerous Andean and Guianan incertae sedis taxa [9,31,78].

Funding

This study was supported by Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq; grant 304755/2020-6), and Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ; grant E-26/202.954/2017). This study was also supported by CAPES (Coordenação de Aperfeiçoamento de Pessoal de Nível Superior, Finance Code 001) through the Programa de Pós-Graduação em: Biodiversidade e Biologia Evolutiva/UFRJ; Genética/UFRJ; and Zoologia, Museu Nacional/UFRJ.

Data Availability Statement

DNA sequences used in this study are deposited in GenBank.

Acknowledgments

Special thanks to Claudia Bove and Bruno Costa for helping in collecting trips when the greatest part of specimens here analyzed were collected. Thanks are also due to Pedro Amorim, Beatrizz Oliveira, José Mattos, Anais Barbosa, and Axel Katz for help during more recent collecting trips, and to Pedro Amorim for taking the photo of T. albinotatus. Axel Katz, José Mattos, and Paulo Vilardo provided most sequences obtained in previous studies and that were used here. Thanks to the Willi Hennig Society for making TNT available.

Conflicts of Interest

The author declares no conflict of interest.

Appendix A

List of specimens used in osteological comparisons (all specimens cleared and stained for osteological examination). MNRJ, Museu Nacional, Rio de Janeiro; MUSM, Museo Universidad San Marcos, Lima; MZUSP, Museu de Zoologia, Universidade de São Paulo; UFRJ, Institute of Biology, Federal University of Rio de Janeiro; USNM, National Museum of Natural History, Smithsonian Institution, Washington D.C. Species o Trichomycterus are below listed according to the main lineages designated in this study.
Trichomycteridae
Genus Trichomycterus: subgenus Megacambeva:T. giganteus Lima & Costa, 2004: UFRJ 5732, 2 (paratypes); UFRJ 5733, 2 (paratypes); subgenus Paracambeva: T. itatiayae Miranda-Ribeiro, 1906: UFRJ 5155, 2; UFRJ 5222, 1; T. reinhardti group: T. anaisae Katz & Costa, 2021: UFRJ 12679, 2; T. funebris Katz & Costa, 2021: UFRJ 9975, 1; UFRJ 9829, 1; T. humboldti Costa & Katz, 2021: UFRJ 4555, 1; UFRJ 4557, 1; UFRJ 10008, 1; UFRJ 10018, 1; T. ingaiensis Katz & Costa, 2021: UFRJ 9334, 2; UFRJ 9997, 1; T. luetkeni Katz & Costa, 2021: UFRJ 12681, 3; T. pauciradiatus Alencar & Costa, 2006: UFRJ 5808, 6 (paratypes); T. piratymbara Katz, Barbosa & Costa, 2014: UFRJ 8595, 5 (paratypes); T. reinhardti (Eigenmann 1917): UFRJ 9995, 2; T. sainthilairei Katz & Costa, 2021: UFRJ 9971, 5; T. septemradiatus Katz, Barbosa & Costa, 2014: UFRJ 8385, 3 (paratypes); subgenus Trichomycterus: T. nigricans group: T. caipora Lima, Lazzarotto & Costa, 2008: UFRJ 7614, 3 paratypes; T. immaculatus (Eigenmann & Eigenmann, 1889): UFRJ 7265, 1; UFRJ 12051, 1; UFRJ 10489, 1; UFRJ 7272, 2; T. nigricans Valenciennes, 1832: UFRJ 11897, 3; UFRJ 11898, 1; UFRJ 11899, 2; T. santaeritae (Eigenmann, 1918): UFRJ 12589, 3; UFRJ 646, 1; T. nigroauratus group: T. maculosus Barbosa & Costa, 2010: UFRJ 5168, 1 paratype; UFRJ 5169, 2 paratypes; T. nigroauratus Barbosa & Costa, 2008: UFRJ 5166, 1; UFRJ 5594, 3; UFRJ 5167, 2 paratypes; UFRJ 4552, 1 (paratype); UFRJ 5154, 1 paratypes; T. quintus Costa, 2020: UFRJ 11844, 3 (paratypes); subgenus Humboldtglanis: T. albinotatus Costa 1992: UFRJ 0583, 2 (paratypes); UFRJ 5628, 3; T. vitalbrazili Vilardo, Katz & Costa, 2020: UFRJ 12128, 1 (paratype); UFRJ 12150, 2 (paratypes); subgenus Cryptocambeva: T. brasiliensis Lütken, 1874: UFRJ 4834, 3; T. brunoi Barbosa & Costa, 2010: UFRJ 5658, 5 (paratypes); T. candidus (Miranda-Ribeiro, 1949): UFRJ 4928, 5; T. claudiae Barbosa & Costa, 2010: UFRJ 5685, 3 (paratypes); T. fuliginosus Barbosa & Costa, 2010: UFRJ 5207, 2 (paratypes); MNRJ 18177, 4 (paratypes); T. giarettai Barbosa & Katz, 2016: UFRJ 9739, 3 (paratypes); T. mariamole Barbosa & Costa, 2010: UFRJ 5400, 3 (paratypes); UFRJ 5401, 3 (paratypes); T. macrotrichopterus Barbosa & Costa, 2010: UFRJ 5776, 2 (paratypes); T. mimonha Costa, 1992: UFRJ 0644, 1 paratype; T. mirissumba Costa, 1992: UFRJ 4730, 5; T. novalimensis Barbosa & Costa, 2010: MZUSP 37145, 5 (paratypes); T. pirabitira Barbosa & Azevedo, 2012: UFRJ 8264, 3 (paratypes); UFRJ 5829, 3 (paratypes); T. potschi Barbosa & Costa 2003: UFRJ 4728, 5; T. rubiginosus Barbosa & Costa, 2010: MZUSP 37168, 5 (paratypes); T. vermiculatus (Eigenmann, 1918): UFRJ 5206, 5; subgenus Psammocambeva: T. pradensis group: T. melanopygius Reis, dos Santos, Britto, Volpi & de Pinna, 2020: UFRJ 557, 1; T. pradensis Sarmento-Soares, Martins-Pinheiro, Aranda & Chamon, 2005: UFRJ 10920, 1; UFRJ 10921, 2; T. tete Barbosa & Costa, 2011: UFRJ 7774, 3 (paratypes); Trichomycterus sp.: UFRJ 12260, 3; T. travassosi group: T. cf. T. alternatus (Eigenmann, 1917): UFRJ 9900, 4; UFRJ 556, 2; UFRJ 5673, 1; UFRJ 11913, 3; T. aurogutattus Costa, 1992: UFRJ 12476, 3; UFRJ 4558, 2; UFRJ 4562, 3; T. caudofasciatus Alencar & Costa, 2004: UFRJ 5656, 5 paratypes; T. gasparinii Barbosa, 2013: UFRJ 8158, 7 paratypes; T. jacupiranga Wosiacki & Oyakawa, 2005: UFRJ 4549, 5; UFRJ 5639, 2; T. longibarbatus Costa, 1992: UFRJ 5674, 3; UFRJ 1141, 1; T. macrophthalmus Barbosa & Costa, 2012: UFRJ 5675, 3 paratypes; T. mimosensis Barbosa, 2013: UFRJ 7792, 5 paratypes; T. pantherinus Alencar & Costa, 2004: UFRJ 5660, 6 (paratypes); T. puriventris Barbosa & Costa, 2012: UFRJ 5677, 1 (paratype); UFRJ 5405, 6 (paratypes); UFRJ 8432, 5 (paratypes); T. travassosi (Miranda-Ribeiro 1949): UFRJ 4554, 3; UFRJ 4563, 1; Trichomycterus sp.: UFRJ 5434, 2; Trichomycterus sp.: UFRJ 5833, 2.
Other Trichomycterinae
Bullockia maldonadoi (Eigenmann, 1928): MZUSP 36958, 1; Cambeva balios (Ferrer & Malabarba 2013): UFRJ 11862, 1; Cambeva brachykechenos (Ferrer & Malabarba, 2013): UFRJ 10586, 1; Cambeva castroi (de Pinna, 1992): UFRJ 10670, 2; Cambeva concolor Costa, 1992: MZUSP 422206, 1 (paratype); Cambeva crassicaudata (Wosiacki & de Pinna, 2008): UFRJ 11851, 1; Cambeva cubataonis (Bizerril, 1994): UFRJ 8871, 5; Cambeva davisi (Haseman, 1911): UFRJ 10713, 8; Cambeva diatropoporos Ferrer & Malabarba, 2013: UFRJ 6913, 1; Cambeva flavopicta Costa, Feltrin & Katz, 2020: UFRJ 12663, 3 (paratypes); UFRJ 12664, 5 (paratypes); Cambeva guareiensis Katz & Costa, 2020: UFRJ 12170, 6 (paratypes); Cambeva naipi (Wosiacki & Garavello, 2004): UFRJ 10842, 2; UFRJ 10843, 1; Cambeva stawiarski (Miranda-Ribeiro, 1968): UFRJ 11850, 1; Cambeva toroba (Wosiacki & Garavello, 2004): UFRJ 9752, 5; Cambeva tropeira Ferrer & Malabarba, 2011: UFRJ 6935, 2; Cambeva variegata (Costa, 1992): UFRJ 9346, 2; UFRJ 8385, 2; Cambeva zonata (Eigenmann, 1918): UFRJ 11900, 1; Cambeva sp1: UFRJ 6938, 4; Cambeva sp2: UFRJ 6912, 3; Cambeva sp3: UFRJ 6021, 3; Cambeva sp4: UFRJ 6923, 3; Eremophilus mutisii Humboldt, 1805: MZUSP 35409, 1; Hatcheria macraei (Girard, 1855): MZUSP 35687, 1; Ituglanis amazonicus (Steindachner, 1882): USNM 317738, 1; UFRJ 5866, 7; Ituglanis boitata Ferrer, Donin & Malabarba, 2015: UFRJ 10583, 1; Ituglanis eichorniarum (Miranda-Ribeiro, 1912): UFRJ 5608, 1; Ituglanis gracilior (Eigenmann, 1912): USNM 272288, 1; Ituglanis parahybae (Eigenmann, 1918): UFRJ 704, 1; UFRJ 0761, 1; Ituglanis paraguassuensis Campos-Paiva & Costa, 2007: UFRJ 7282, 1 (paratype); USNM 301016, 2 (paratypes); Ituglanis props (Miranda-Ribeiro 1908): UFRJ 8730, 1; Scleronema guapa Ferrer & Malabarba, 2020: UFRJ 10645, 2; Scleronema macunada Ferrer & Malabarba, 2020: UFRJ 11856, 1; Scleronema milonga Ferrer & Malabarba, 2020: UFRJ 5826, 2; Scleronema minutum (Boulenger, 1891): UFRJ 11855, 1; Scleronema sp.: UFRJ 6942, 3; “Trichomycterusareolatus Valenciennes, 1846: MZUSP 36959, 1; “Trichomycterus” punctulatus Valenciennes, 1846: MUSM 1702, 1; “Trichomycterusrivulatus Valenciennes, 1846: MUSM 3115, 1.
Microcambevinae
Listrura tetraradiata Landim & Costa, 2002: UFRJ 4588, 6 paratypes; Microcambeva ribeirae Costa, Lima & Bizerril, 2004: UFRJ uncat., 2.
  Copionodontinae
    Copionodon pecten de Pinna, 1992: MZUSP 48962, 1.
  Trichogeninae
    Trichogenes longipinnis Britski & Ortega 1983: UFRJ 682, 2.
  Nematogenidae
    Nematogenys inermis Guichenot, 1848: MZUSP 36957, 2.

Appendix B

Table A1. Terminal taxa for molecular phylogeny and respective GenBank accession numbers.
Table A1. Terminal taxa for molecular phylogeny and respective GenBank accession numbers.
SpeciesCOICYTBMYH6RAG2
Nematogenys inermisKY857952–––––KY858107KY858182
Copionodon pectenKY857929–––––KY858084KY858169
Trichogenes longipinnisMK123682MK123704MF431104MF431117
Microcambeva ribeirae MN385807–––––MN385819MN385832
Listrura tetraradiataJQ231083JQ231088MN385814MN385826
Eremophilus mutisiiKY857931–––––KY858086KY858171
‘Trichomycterus’ punctulatusKY857983–––––KY858134KY858203
Bullockia maldonadoiKY857926FJ772237KY858081KY858166
Hatcheria areolataKY857964FJ772214–––––KY858188
Ituglanis boitataMK123684MK123706MF431105MK123758
Scleronema minutumMK123685MK123707MK123735MK123759
Scleronema cf. guapaMK123687MK123709MF431107MF431118
Scleronema cf. ibirapuitaMK123688MK123710MK123737MK123761
Scleronema macanudaMK123686MK123708MK123736MK123760
Cambeva variegataKY857991KY858060–––––KY858211
Cambeva brachykechenosMN995669MK123711MF431108–––––
Cambeva diatropoporosKY857996KY858065KY858147KY858213
Cambeva cubataonisMK123689MK123713MK123740 MN385820
Cambeva davisi KR140345 MK123714MK123741MK123762
Cambeva castroi–––––MK123712MK123739–––––
Cambeva zonataKY857986KY858053KY858137–––––
Trichomycterus itatiayaeKY857977KY858046KY858128KY858198
Trichomycterus septemradiatusMK123700MK123729MK123755MW196781
Trichomycterus pauciradiatusMT941796MT941833MW196769MW196782
Trichomycterus piratymbaraKY857970KY858040KY858121KY858194
Trichomycterus reinhardtiMK123698MK123727MF431106MF431119
Trichomycterus anaisaeMT941782MT941820––––––––––
Trichomycterus sainthilaireiMT941815MT941853––––––––––
Trichomycterus luetkeniMT941793MT941831KY858148KY858214
Trichomycterus ingaiensisMT941790MT941829––––––––––
Trichomycterus funebrisMT941785MT941823KY858121KY858194
Trichomycterus humboldtiMT941787MT941824––––––––––
Trichomycterus giganteusMK123693MK123720MK123746MT446426
Trichomycterus nigricansMN813005MK123723MK123750MK123765
Trichomycterus caiporaMN813008MN813000MN812996MN812992
Trichomycterus santaeritaeMN813009MN813001MN812997MN812993
Trichomycterus immaculatusMK123694MK144348MK123747MF431120
Trichomycterus nigroauratusMK123696MK123724MK123751MK123766
Trichomycterus maculosusMN813010MN813002MN812998MN812994
Trichomycterus quintusMT299917MN812999MT305242–––––
Trichomycterus mimonhaMW196749MW196758MW196770MW196783
Trichomycterus fuliginosusMW196750MW196759MW196771MW196784
Trichomycterus brunoiMW196751MW196760MW196772MW196785
Trichomycterus mirissumbaMW196752MW196761MW196773MW196786
Trichomycterus pirabitiraKY857982KY858051KY858133–––––
Trichomycterus macrotrichopterusMW196753MW196762MW196774MW196787
Trichomycterus brasiliensisMK123691MK123717MK123744MK123763
Trichomycterus candidusMK123692MK123718MK123745MW196788
Trichomycterus potschi–––––MW196763MW196775MW196789
Trichomycterus claudiaeMW196754MW196764MW196776MW196790
Trichomycterus novalimensisMW196755MW196765MW196777MW196791
Trichomycterus rubiginosusMK123699MK123728MK123754MK123767
Trichomycterus albinotatusMN813007MK123716MK123743MN812990
Trichomycterus vitalbraziliMT435137MK748279MK748280MT446428
Trichomycterus travassosiMK123701MK123730MK123757–––––
Trichomycterus caudofasciatusMN812995MK123719MK123719MK123764
Trichomycterus jacupirangaMK123702MK123731MK123757–––––
Trichomycterus pantherinusMK123697MK123725MK123752MN812989
Trichomycterus auroguttatusMT435135MT436452MT436450–––––
Trichomycterus alternatusMK123690MK123715MK123742MN812991
Trichomycterus melanopygusKY857976KY858045KY858127KY858197
Trichomycterus pradensisMN813003MK123726MK123753MN812988
Trichomycterus tete–––––MH620991––––––––––
Trichomycterus mimosensis–––––MH621150––––––––––
Trichomycterus longibarbatus–––––MH621258––––––––––

Appendix C

List of morphological characters.
Jaw suspensorium
  • Autopalatine, dorsal surface, lateral portion, long longitudinal ridge: (0) absent; (1) present.
  • Autopalatine, dorsal surface, latero-middle portion, short longitudinal ridge: (0) absent; (1) present.
  • Autopalatine, postero-lateral process, development: (0) well-developed; (1) rudimentary.
  • Autopalatine, postero-lateral process, direction: (0) postero-lateral; (1) posterior; (2) lateral.
  • Autopalatine, postero-lateral process, length relative to autopalatine longitudinal length excluding postero-lateral process: (0) distinctively shorter; (1) nearly equal or slightly longer.
  • Autopalatine in specimens above 45 mm SL, medial margin, shape: (0) concave, sometimes nearly straight; (1) convex; (2) with deep concavity, posteriorly followed by broad convexity.
  • Autopalatine, articular facet for lateral ethmoid, ventral flap, shape: (0) small or rudimentary; (1) long.
  • Autopalatine, dorsal surface, articular facet for the lateral ethmoid, prominent ridge terminating in process connected to sesamoid supraorbital: (0) absent; (1) present.
  • Autopalatine, dorsal surface, articular facet for the lateral ethmoid, robust comma-shaped support: (0) absent; (1) present.
  • Metapterygoid, posterior portion, expansion: (0) absent; (1) present.
  • Metapterygoid, postero-ventral margin, deep concavity accommodating dorsal expansion of the antero-dorsal process of the quadrate: (0) absent; (1) present.
  • Hyomandibula, anterior-outgrowth, shape: (0) deep; (1) shallow.
  • Hyomandibula, anterior-outgrowth, dorsal margin, shape: (0) slightly curved, sometimes with weak dorsal concavity; (1) nearly straight and horizontal, with deep U-shaped concavity; (2) step anterior and posterior portions converging to pronounced V-shaped concavity reaching central outgrowth; (3) deep concavity reaching ventral outgrowth.
  • Opercle, anterior odontodes, arrangement: (0) transversal; (1) diagonal.
  • Opercle and interopercle, largest and internal-most odontodes, distal portion, shape: (0) straight to slightly curved; (1) strongly curved, its tip forming an angle of about 90° with odontode main axis.
  • Interopercle, anterior portion, distinctive anterior expansion: (0) absent; (1) present.
  • Interopercle, dorsal process, position relative to anterior margin of odontode patch: (0) distant; (1) close.
  • Interopercle, dorsal process, anterior margin, shape: (0) slightly concave; (1) prominent V-shaped notch.
  • Preopercle, ventral flap, extent relative to ventral bone limit: (0) slightly extending beyond it; (1) expanding ventrally beyond it.
  • Maxilla, largest length relative premaxilla largest length: (0) shorter; (1) longer.
  • Maxilla, shape: (0) slightly curved; (1) somewhat folded; (2) nearly straight.
  • Maxilla, postero-middle process, shape: (0) moderate, slightly projecting beyond bone profile; (1) large, forming pronounced expansion.
  • Antorbital, association with anterior segment of the latero-sensory infraorbital canal: (0) associated; (1) separated.
  • Sesamoid supraorbital, distinctive robust lateral process: (0) absent; (1) present.
  • Mesethmoid, lateral margin, ventral fold: (0) absent; (1) present.
  • Lateral ethmoid, articular facet for the autopalatine, folded laminar expansion: (0) absent; (1) present.
  • Lateral ethmoid, antero-dorsal extremity, direction: (0) anterior; (1) lateral; (2) medial.
  • Lateral ethmoid, medial margin, proximity relative to its paired homologous: (0) in contact; (1) separate.
  • Lateral ethmoid, lateral margin, area close to sesamoid supraorbital, lateral projection: (0) absent; (1) present.
  • Lateral ethmoid, lateral margin, prominent trapezoidal process: (0) absent; (1) present.
  • Lateral ethmoid, lateral margin, widening to form distinct wall limiting fossa aperture: (0) absent; (1) present.
  • Sphenotic-prootic-pterosphenoid complex, lateral process, extent relative to main neurocranium body limit: (0) short, slightly extending beyond it; (1) long, strongly projecting beyond it.
  • Pterotic, lateral process, extremity, shape and extent relative to limit of lateral neighbouring bones: (0) truncate, not projecting beyond; (1) rounded, projecting beyond.
  • Epioccipital, posterior margin, sharp process posteriorly directed: (0) absent; (1) present.
  • Frontal, anterior cranial fontanel, shape: (0) well-developed orifice; (1) minute aperture.
  • First free vertebra, parapophysis, branching: (0) unbranched; (1) branched.
  • Second free vertebra, parapophysis, direction: (0) lateral; (1) posterolateral.
  • Second free vertebra, parapophysis, general shape: (0) robust; (1) slender.
  • Second free vertebra, parapophysis, antero-distal portion, expansion: (0) absent; (1) present.
  • Second free vertebra, parapophysis, posterior margin, small notch: (0) absent; (1) present.
  • Second free vertebra, parapophysis, postero-distal portion, expansion: (0) absent; (1) present.
  • Third free vertebra, parapophysis, direction: (0) postero-lateral; (1) posterior.
  • Third free vertebra, parapophysis, shape: (0) nearly straight; (1) posteriorly curved.
  • Weberian capsule, shape: (0) pear-like, abruptly narrowing laterally; (1) slender, subtly narrowing laterally.
  • Scapulo-coracoid, supra-lateral process, shape: (0) needle-shaped; (1) tree-shaped.
  • Posttemporo-supracleithrum, size and space around it: (0) large, occupying most space among neighbouring bones; (1) small, surrounded by large space separating from neighbouring bones.
  • Pelvic bone, development: (0) well-developed; (1) poorly-developed.
  • Pelvic bone, general shape: (0) compact; (1) elongated.
  • Pelvic bone, posterior process, development: (0) well-developed; (1) rudimentary. Remarks: taxa with poorly developed pelvic bone or lacking a pelvic bone were coded as (?).
  • Pelvic bone, anterior processes, basal region: (0) broad; (1) narrow. Remarks: taxa lacking a pelvic bone were coded as (?).
  • Pelvic bone, anterior processes, number: (0) two; (1) three. Remarks: taxa lacking a pelvic bone were coded as (?).
  • Pelvic bone, postero-medial portion, small process close to cartilage supporting fin rays: (0) absent; (1) present.

Appendix D

Table A2. Matrix of distribution of character states among taxa.
Table A2. Matrix of distribution of character states among taxa.
TaxonCharacters 1–52
Nematogenys inermis00???0?0??0?????0??0?00?00000???0?0?000000000?000000
Copionodon pecten00???0?0??0?????00?0?00?00000???0000000000000?000000
Trichogenes longipinnis00???0?0??0?????00?0?00?00000???0000000000000?00000?
Microcambeva ribeirae000000?00?????0?0?0100000000000000?0100000000?000000
Listrura tetraradiata001??0?00?????0?0?0100000000000000?0100000000???????
Eremophilus mutisii00000000000000000000000000001?000000000000000???????
Trichomycterus punctulatus00000000000000000000000000000000?0000000000000000000
Bullockia maldonadoi0000100000000000001100?00000000000000000000000000000
Trichomycterus areolatus0000100000000000001000000000000000000000000000000000
Ituglanis boitata0000000000000000000000000000000000?00000001000000000
Scleronema minutum0000000000000000100100?00000000000011000010000000000
Scleronema cf guapa0000000000000000100100?00000000000011000010000000000
Scleronema cf ibirapuita0000000000000000100100?00000000000011000010000000000
Scleronema macanuda0000000000000000100100?00000000000011000010000000000
Cambeva variegata0000000000000000100000?00000000000011000010000000000
Cambeva brachychenos0000000000000000100000?00000000000011000010000000000
Cambeva diatropoporos001?000000000000100000000000000000011000010000000000
Cambeva cubataonis0000000000000000100000?000000000?0011000010000000000
Cambeva davisi0000000000000000100000?000000000?0011000010000000000
Cambeva castroi0000000000000000100000?000000000?0011000010000000000
Cambeva zonata0000000000000000100000?000000000?0011000010000000000
Trichomycterus giganteus0101000100003010000000000000010000001000000110000010
Trichomycterus itatiayae001?000000101000100000?00020000000001100000000000001
Trichomycterus septemradiatus000000100000000010000010000000000000110000000010?000
Trichomycterus pauciradiatus000000100000000010000010000000000000110000000010?000
Trichomycterus piratymbara000000100000000010000010000000000000110000000010?000
Trichomycterus reinhardti000000100000000010000010000000000000110000000010?000
Trichomycterus anaisae000000100000000010000010000000000000110000000010?000
Trichomycterus funebris000000100000000010000010000000000000110000000010?000
Trichomycterus humboldti000000100000000010000010000000000000110000000010?000
Trichomycterus luetkeni000000100000000010000010000000000000110000000010?000
Trichomycterus ingaiensis000000100000000010000010000000000000110000000010?000
Trichomycterus sainthilairei000000100000000010000010000000000000110000000010?000
Trichomycterus nigricans0000000001000000000101000010000100001010001000000000
Trichomycterus caipora0000000001000000000101000010000100001010001000000000
Trichomycterus santaeritae0000000001000000000101000010000100001000001000000000
Trichomycterus immaculatus0000000001000000000001000010000100001010001000000000
Trichomycterus nigroauratus0000000001000000000000000110000100001010001000010000
Trichomycterus maculosus0000000001000000000000000110000100001010001000010000
Trichomycterus quintus0000000001000000000000000110000100001010000000010000
Trichomycterus mimonha1000000000000100000000001001100010001001000001001100
Trichomycterus fuliginosus1000000000000100000000001001100010001001000001001100
Trichomycterus brunoi1000000000000100000000001001100010001001000001001100
Trichomycterus mirissumba1000000000000100000000001001100010001001000001001100
Trichomycterus pirabitira1000000000000100000000001001100010001001000001001100
Trichomycterus macrotrichopterus1000000000000100000000001001100010001001000001001100
Trichomycterus brasiliensis1000000000000100000000001001100010001001000001001100
Trichomycterus candidus100000000000010000000000100110001000100100000100????
Trichomycterus potschi1000000000000100000000001001100010001001000001001100
Trichomycterus claudiae1000000000000100000000001001100010001001000001001100
Trichomycterus novalimensis1000000000000100000000001001100010001001000001001100
Trichomycterus rubiginosus1000000000000100000000001001100010001001000001001100
Trichomycterus albinotatus1000010000002100000000001001100001001001000000001000
Trichomycterus vitalbrazili1000010000002100000000001001100001001001000000001000
Trichomycterus mimosensis0000000000000000000100000000001000101000000000000000
Trichomycterus travassosi0000000000000000000100000000001000101000000000000000
Trichomycterus caudofasciatus0000000000000000000100000000001000101000000000000000
Trichomycterus cf jacupiranga0000000000000000000100010000001000101000000000000000
Trichomycterus pantherinus0000000000000000000100010000001000101000000000000000
Trichomycterus longibarbatus0002000000000000010120000000001000001000000000000000
Trichomycterus auroguttatus0000120010000000010110000000001000101000100000000000
Trichomycterus alternatus0000100000000000010110000000001000101000100000000000
Trichomycterus melanopygus0000000000010000001100000000000000001000000000000000
Trichomycterus pradensis0000000000010001001100000000000000001000000000000000
Trichomycterus tete0000000000010000001100000000000000001000000000000000

Appendix E

Table A3. Best-fitting models.
Table A3. Best-fitting models.
PartitionBase PairsEvolutionary Model
COI 1st174TNe+G4
COI 2nd174F81+F+I+G4
COI 3rd174TIM+F+G4
CYTB 1st363K2P+I+G4
CYTB 2nd363TN+F+I
CYTB 3rd362TIM2+F+I+G4
MYH6 1st181JC+I+G4
MYH6 2nd181HKY+F+I+G4
MYH6 3rd181K2P+G4
RAG2 1st274K3P+I
RAG2 2nd274TVMe+G4
RAG2 3rd273K2P+G4
Osteology52JC+I+G4

References

  1. Vari, R.P.; Malabarba, L.R. Neotropical ichthyology: An overview. In Phylogeny and Classification of Neotropical Fishes; Malabarba, L.R., Reis, R.E., Vari, R.P., Lucena, Z.M.S., Lucena, C.A.S., Eds.; Edipucrs: Porto Alegre, Brazil, 1998; pp. 1–11. [Google Scholar]
  2. Reis, R.E.; Kullander, S.O.; Ferraris, C.J., Jr. (Eds.) Check List of the Freshwater Fishes of South and Central America; Edipucrs: Porto Alegre, Brazil, 2003. [Google Scholar]
  3. Fernández, L.; Schaefer, S.A. Relationships among the Neotropical candirus (Trichomycteridae, Siluriformes) and the evolution of parasitism based on analysis of mitochondrial and nuclear gene sequences. Mol. Phylogenet. Evol. 2009, 52, 416–423. [Google Scholar] [CrossRef] [PubMed]
  4. Myers, G.S. Two extraordinary new blind nematognath fishes from the Rio Negro, representing a new subfamily of Pygidiidae, with a rearrangement of the genera of the family, and illustrations of some previously described genera and species from Venezuela and Brazil. Calif. Acad. Sci. 1944, 4, 591–602. [Google Scholar]
  5. Myers, G.S.; Weitzman, S.H. Two remarkable new trichomycterid catfishes from the Amazon basin in Brazil and Colombia. J. Zool. 1966, 149, 277–287. [Google Scholar] [CrossRef]
  6. Schaefer, S.A.; Provenzano, F.; de Pinna, M.; Baskin, J.N. New and noteworthy Venezuelan glanapterygine catfishes (Siluriformes, Trichomycteridae), with discussion of their biogeography and psammophily. Am. Mus. Novit. 2005, 3496, 1–27. [Google Scholar] [CrossRef]
  7. Costa, W.J.E.M.; Henschel, E.; Katz, A.M. Multigene phylogeny reveals convergent evolution in small interstitial catfishes from the Amazon and Atlantic forests (Siluriformes: Trichomycteridae). Zool. Scr. 2020, 49, 159–173. [Google Scholar] [CrossRef]
  8. Fricke, R.; Eschmeyer, W.N.; Van der Laan, R. Eschmeyer’s Catalog of Fishes: Genera, Species, References. Available online: http://researcharchive.calacademy.org/research/ichthyology/catalog/fishcatmain.asp (accessed on 11 June 2021).
  9. Katz, A.M.; Barbosa, M.A.; Mattos, J.L.O.; Costa, W.J.E.M. Multigene analysis of the catfish genus Trichomycterus and description of a new South American trichomycterine genus (Siluriformes, Trichomycteridae). Zoosyst. Evol. 2018, 94, 557–566. [Google Scholar] [CrossRef] [Green Version]
  10. Eigenmann, C.H. The Pygidiidae, a subfamily of South American catfishes. Mem. Carnegie Mus. 1918, 7, 259–398. [Google Scholar]
  11. De Pinna, M.C.C.; Wosiacki, W. Trichomycteridae. In Check List of the Freshwater Fishes of South and Central America; Reis, R.E., Kullander, S.O., Ferraris, C.J., Jr., Eds.; Edipucrs: Porto Alegre, Brazil, 2003. [Google Scholar]
  12. Arratia, G.; Chang, A.; Menu-Marque, S.; Rojas, G. About Bullockia gen. nov., Trichomycterus mendozensis n. sp. and revision of the family Trichomycteridae (Pisces, Siluriformes). Stud. Neotrop. Fauna Environ. 1978, 13, 157–194. [Google Scholar] [CrossRef]
  13. Costa, W.J.E.M. Description de huit nouvelles espèces du genre Trichomycterus (Siluriformes: Trichomycteridae), du Brésil oriental. Rev. Fr. D’aquariol. 1992, 18, 101–110. [Google Scholar]
  14. Costa, W.J.E.M.; Bockmann, F.A. Un nouveau genre néotropical de la famille des Trichomycteridae (Siluriformes: Loricarioidei). Rev. Fr. D’aquariol. 1993, 20, 43–46. [Google Scholar]
  15. Fernández, L.; de Pinna, M.C.C. Phreatic Catfish of the Genus Silvinichthys from southern South America (Teleostei, Siluriformes, Trichomycteridae). Copeia 2005, 2005, 100–108. [Google Scholar] [CrossRef]
  16. Bichuette, M.E.; Rizzato, P.P. A new species of cave catfish from Brazil, Trichomycterus rubbioli sp. n., from Serra do Ramalho karstic area, São Francisco River basin, Bahia State (Silurifomes: Trichomycteridae). Zootaxa 2012, 3480, 48–66. [Google Scholar] [CrossRef] [Green Version]
  17. Rizzato, P.P.; Bichuette, M.E. Ituglanis boticario, a new troglomorphic catfish (Teleostei: Siluriformes: Trichomycteridae) from Mambaí karst area, central Brazil. Zoologia 2014, 31, 577–598. [Google Scholar] [CrossRef] [Green Version]
  18. De Pinna, M.C.C. Phylogenetic relationships of neotropical Siluriformes (Teleostei: Ostariophysi): Historical overview and synthesis of hypotheses. In Phylogeny and Classification of Neotropical Fishes; Malabarba, L.R., Reis, R.E., Vari, R.P., Lucena, Z.M.S., Lucena, C.A.S., Eds.; Edipucrs: Porto Alegre, Brazil, 1998; pp. 279–330. [Google Scholar]
  19. Arratia, G. Silvinichthys, a new genus of trichomycterid catfishes from the Argentinian Andes, with redescription of Trichomycterus nigricans. Ichthyol. Explor. Freshw. 1998, 9, 347–370. [Google Scholar]
  20. Bockmann, F.A.; Casatti, L.; de Pinna, M.C.C. A new species of trichomycterid catfish from the Rio Paranapanema, southeastern Brazil (Teleostei; Siluriformes), with comments on the phylogeny of the family. Ichthyol. Explor. Freshw. 2004, 15, 225–242. [Google Scholar]
  21. Ferrer, J.; Malabarba, L.R. Taxonomic review of the genus Trichomycterus Valenciennes (Siluriformes: Trichomycteridae) from the laguna dos Patos system, Southern Brazil. Neotrop. Ichthyol. 2013, 11, 217–246. [Google Scholar] [CrossRef] [Green Version]
  22. Ochoa, L.E.; Roxo, F.F.; DoNascimiento, C.; Sabaj, M.H.; Datovo, A.; Alfaro, M.; Oliveira, C. Multilocus analysis of the catfish family Trichomycteridae (Teleostei: Ostariophysi: Siluriformes) supporting a monophyletic Trichomycterinae. Mol. Phylogenet. Evol. 2017, 115, 71–81. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  23. Costa, W.J.E.M.; Feltrin, C.R.M.; Katz, A.M. Filling distribution gaps: Two new species of the catfish genus Cambeva from southern Brazilian Atlantic Forest (Siluriformes: Trichomycteridae). Zoosyst. Evol. 2021, 97, 147–159. [Google Scholar] [CrossRef]
  24. Ferrer, J.; Malabarba, L.R. Systematic revision of the Neotropical catfish genus Scleronema (Siluriformes: Trichomycteridae), with descriptions of six new species from Pampa grasslands. Neotrop. Ichthyol. 2020, 18, e190081. [Google Scholar] [CrossRef]
  25. Costa, W.J.E.M.; Katz, A.M. Integrative taxonomy supports high species diversity of south-eastern Brazilian mountain catfishes of the T. reinhardti group (Siluriformes: Trichomycteridae). Syst. Biodivers. 2021. [Google Scholar] [CrossRef]
  26. Barbosa, M.A.; Costa, W.J.E.M. Description of a new species of the catfish genus Trichomycterus (Teleostei: Siluriformes: Trichomycteridae) from the rio de Contas basin, northeastern Brazil. Vertebr. Zool. 2011, 61, 307–312. [Google Scholar]
  27. Donin, L.M.; Ferrer, J.; Carvalho, T.P. Taxonomical study of Trichomycterus (Siluriformes: Trichomycteridae) from the Ribeira de Iguape River basin reveals a new species recorded in the early 20th century. J. Fish Biol. 2020. [Google Scholar] [CrossRef] [PubMed]
  28. Barbosa, M.A.; Costa, W.J.E.M. Trichomycterus potschi (Siluriformes: Loricarioidei): A new trichomycterid catfish from coastal streams of southeastern Brazil. Ichthyol. Explor. Freshw. 2003, 14, 281–287. [Google Scholar]
  29. Barbosa, M.A.; Costa, W.J.E.M. Seven new species of the catfish genus Trichomycterus (Teleostei: Siluriformes: Trichomycteridae) from southeastern Brazil and redescription of T. brasiliensis. Ichthyol. Explor. Freshw. 2010, 21, 97–122. [Google Scholar]
  30. Bockmann, F.A.; Sazima, I. Trichomycterus maracaya, a new catfish from the upper rio Paraná, southeastern Brazil (Siluriformes: Trichomycteridae), with notes on the T. brasiliensis species-complex. Neotrop. Ichthyol. 2004, 2, 61–74. [Google Scholar] [CrossRef] [Green Version]
  31. Ochoa, L.E.; Datovo, A.; DoNascimiento, C.; Roxo, F.F.; Sabaj, M.H.; Chang, J.; Melo, B.F.; Silva Gabriel, S.C.; Foresti, F.; Alfaro, M.; et al. Phylogenomic analysis of trichomycterid catfshes (Teleostei: Siluriformes) inferred from ultraconserved elements. Sci. Rep. 2020, 10, 2697. [Google Scholar] [CrossRef] [Green Version]
  32. Costa, W.J.E.M.; Mattos, J.L.O.; Amorim, P.F.; Vilardo, P.J.; Katz, A.M. Relationships of a new species support multiple origin of melanism in Trichomycterus from the Atlantic Forest of south-eastern Brazil (Siluriformes: Trichomycteridae). Zool. Anz. 2020, 288, 74–83. [Google Scholar] [CrossRef]
  33. Vilardo, P.J.; Katz, A.M.; Costa, W.J.E.M. Relationships and description of a new species of Trichomycterus (Siluriformes: Trichomycteridae) from the Rio Paraíba do Sul basin, south-eastern Brazil. Zool. Stud. 2020, 59, e53. [Google Scholar] [CrossRef]
  34. Costa, W.J.E.M.; Mattos, J.L.O.; Katz, A.M. Phylogenetic position of Trichomycterus payaya and examination of osteological characters diagnosing the Neotropical catfish genus Ituglanis (Siluriformes: Trichomycteridae). Zool. Stud. 2021, in press. [Google Scholar]
  35. Barbosa, M.A.; Costa, W.J.E.M. Trichomycterus macrophthalmus (Teleostei: Siluriformes: Trichomycteridae), a new species of catfish from the rio Paraiba do Sul basin, southeastern Brazil. Vertebr. Zool. 2012, 62, 79–82. [Google Scholar]
  36. Costa, W.J.E.M.; Katz, A.M.; Mattos, J.L.O.; Amorim, P.F.; Mesquita, B.O.; Vilardo, P.J.; Barbosa, M.A. Historical review and redescription of three poorly known species of the catfish genus Trichomycterus from south-eastern Brazil (Siluriformes: Trichomycteridae). J. Nat. Hist. 2020, 53, 2905–2928. [Google Scholar] [CrossRef]
  37. Taylor, W.R.; Van Dyke, G.C. Revised procedures for staining and clearing small fishes and other vertebrates for bone and cartilage study. Cybium 1985, 9, 107–119. [Google Scholar]
  38. Baskin, J.N. Structure and Relationships of the Trichomycteridae; City University of New York: New York, NY, USA, 1973; Volume 14, pp. S1–S62. [Google Scholar]
  39. Arratia, G.; Menu-Marque, S. Revision of the freshwater catfishes of the genus Hatcheria (Siluriformes, Trichomycteridae) with commentaries on ecology and biogeography. Zool. Anz. 1981, 207, 88–111. [Google Scholar]
  40. Arratia, G. Trichomycterus chungaraensis n. sp. and Trichomycterus laucaensis n. sp. (Pisces, Siluriformes, Trichomycteridae) from the high Andean range. Stud. Neotrop. Fauna Environ. 1983, 18, 65–87. [Google Scholar] [CrossRef]
  41. Arratia, G. Development and diversity of the suspensorium of trichomycterids and comparison with loricarioids (Teleostei: Siluriformes). J. Morphol. 1990, 205, 193–218. [Google Scholar] [CrossRef]
  42. Schaefer, S.A.; Fernández, L. Redescription of the Pez Graso, Rhizosomichthys totae (Trichomycteridae) of Lago Tota, Colombia, and aspects of cranial osteology revealed by microtomography. Copeia 2009, 2009, 510–522. [Google Scholar] [CrossRef]
  43. Carvalho, M.; Bockmann, F.A.; de Carvalho, M.R. Homology of the fifth epibranchial and accessory elements of the ceratobranchials among Gnathostomes: Insights from the development of Ostariophysans. PLoS ONE 2013, 8, e62389. [Google Scholar] [CrossRef] [Green Version]
  44. Arratia, G.; Schultze, H.-P. The urohyal: Development and homology within Osteichthyans. J. Morphol. 1990, 203, 247–282. [Google Scholar] [CrossRef]
  45. Britz, R.; Bartsch, P. The myth of dorsal ribs in gnathostome vertebrates. Proc. R. Soc. Lond. Biol. Sci. Ser. B 2003, 270, S1–S4. [Google Scholar] [CrossRef] [Green Version]
  46. Adriaens, D.; Baskin, J.N.; Coppens, H. Evolutionary morphology of trichomycterid catfishes: About hanging on and digging in. In Origin and Phylogenetic Interrelationships of Teleosts; Nelson, J.S., Schultze, H.P., Wilson, M.V.H., Eds.; Verlag Dr. Friedrich Pfeil: München, Germany, 2010; pp. 337–362. [Google Scholar]
  47. De Pinna, M.; Reis, V.; Britski, H. A new species of Trichogenes (Siluriformes, Trichomycteridae), with a discussion on the homologies of the anterior orbital bones in trichomycterids and other loricarioids. Am. Mus. Novit. 2020, 3951, 1–27. [Google Scholar] [CrossRef]
  48. Arratia, G.; Huaquin, L. Morphology of the lateral line system and of the skin of diplomystic and certain primitive loricarioid catfishes and systematic and ecological considerations. Bonn Zool. Monogr. 1995, 36, 1–110. [Google Scholar]
  49. Arratia, G. Catfish head skeleton, an overview. In Catfishes; Arratia, G., Kapoor, B.G., Chardon, M., Diogo, R., Eds.; Science Publishers: Enfield, UK; Plymouth, UK, 2003; pp. 3–46. [Google Scholar]
  50. Britski, H.A.; Ortega, H. Trichogenes longipinnis, novo gênero e espéciede Trichomycterinae do sudeste do Brazil (Pisces, Siluriformes). Rev. Bras. Zool. 1983, 1, 211–216. [Google Scholar] [CrossRef]
  51. Datovo, A.; Bockmann, F.A. Dorsolateral head muscles of the catfish families Nematogenyidae and Trichomycteridae (Siluriformes: Loricarioidei): Comparative anatomy and phylogenetic analysis. Neotrop. Ichthyol. 2010, 8, 193–246. [Google Scholar] [CrossRef] [Green Version]
  52. Hardman, M.; Page, L.M. Phylogenetic relationships among bullhead catfishes of the genus Ameiurus (Siluriformes: Ictaluridae). Copeia 2003, 2003, 20–33. [Google Scholar] [CrossRef]
  53. Cramer, C.A.; Bonatto, S.L.; Reis, R.E. Molecular phylogeny of the Neoplecostominae and Hypoptopomatinae (Siluriformes: Loricariidae) using multiple genes. Mol. Phylogenet. Evol. 2011, 59, 43–52. [Google Scholar] [CrossRef] [PubMed]
  54. Li, C.; Ortí, G.; Zhang, G.; Lu, G. A practical approach to phylogenomics: The phylogeny of ray-finned fish (Actinopterygii) as a case study. BMC Evol. Biol. 2007, 7, 44. [Google Scholar] [CrossRef] [Green Version]
  55. Villa-Verde, L.; Lazzarotto, H.; Lima, S.Q.M. A new glanapterygine catfish of the genus Listrura (Siluriformes: Trichomycteridae) from southeastern Brazil, corroborated by morphological and molecular data. Neotrop. Ichthyol. 2012, 10, 527–538. [Google Scholar] [CrossRef] [Green Version]
  56. Ward, R.D.; Zemlak, T.S.; Innes, B.H.; Last, P.R.; Hebert, P.D. DNA barcoding Australia’s fish species. Philos. Trans. R. Soc. Lond. B Biol. Sci. 2005, 360, 1847–1857. [Google Scholar] [CrossRef]
  57. Chenna, R.; Sugawara, H.; Koike, T.; Lopez, R.; Gibson, T.J.; Higgins, D.G.; Thompson, J.D. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res. 2003, 31, 3497–3500. [Google Scholar] [CrossRef] [Green Version]
  58. Kumar, S.; Stecher, G.; Tamura, K. MEGA7, Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 2016, 33, 1870–1874. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  59. Sereno, P.C. Logical basis for morphological characters in phylogenetics. Cladistics 2007, 23, 565–587. [Google Scholar] [CrossRef]
  60. Kalyaanamoorthy, S.; Minh, B.Q.; Wong, T.K.F.; von Haeseler, A.; Jermiin, L.S. ModelFinder: Fast model selection for accurate phylogenetic estimates. Nat. Methods 2017, 14, 587–589. [Google Scholar] [CrossRef] [Green Version]
  61. Nguyen, L.T.; Schmidt, H.A.; von Haeseler, A.; Minh, B.Q. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Mol. Biol. Evol. 2015, 32, 268–274. [Google Scholar] [CrossRef]
  62. Chernomor, O.; von Haeseler, A.; Minh, B.Q. Terrace aware data structure for phylogenomic inference from supermatrices. Syst. Biol. 2016, 65, 997–1008. [Google Scholar] [CrossRef] [Green Version]
  63. Guindon, S.; Dufayard, J.F.; Lefort, V.; Anisimova, M.; Hordijk, W.; Gascuel, O. New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59, 307–321. [Google Scholar] [CrossRef] [Green Version]
  64. Anisimova, M.; Gil, M.; Dufayard, J.F.; Dessimoz, C.; Gascuel, O. Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes. Syst. Biol. 2011, 60, 685–699. [Google Scholar] [CrossRef] [PubMed]
  65. Minh, B.Q.; Nguyen, M.A.T.; von Haeseler, A. Ultrafast approximation for phylogenetic bootstrap. Mol. Biol. Evol. 2013, 30, 1188–1195. [Google Scholar] [CrossRef]
  66. Hoang, D.T.; Chernomor, O.; von Haeseler, A.; Minh, B.Q.; Vinh, L.S. UFBoot2, Improving the ultrafast bootstrap approximation. Mol. Biol. Evol. 2017, 35, 518–522. [Google Scholar] [CrossRef] [PubMed]
  67. Goloboff, P.A.; Farris, J.S.; Nixon, K.C. TNT, a free program for phylogenetic analysis. Cladistics 2008, 24, 774–786. [Google Scholar] [CrossRef]
  68. Felsenstein, J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 1985, 39, 783–791. [Google Scholar] [CrossRef]
  69. Barbosa, M.A.; Costa, W.J.E.M. Description of a new species of catfish from the upper rio Paraíba do Sul basin, south-eastern Brazil (Teleostei: Siluriformes: Trichomycteridae) and re-description of Trichomycterus itatiayae. Aqua Int. J. Ichthyol. 2008, 14, 175–186. [Google Scholar]
  70. Reis, V.J.C.; de Pinna, M.C.C.; Pessali, T.C. A new species of Trichomycterus Valenciennes, 1832 (Trichomycteridae: Siluriformes) from the Rio Doce drainage with remarkable similarities with Bullockia and a CT-scan survey. J. Fish Biol. 2020, 95, 918–931. [Google Scholar] [CrossRef]
  71. Lezama, A.Q.; Triques, M.L.; Santos, P.S. Trichomycterus argos (Teleostei: Siluriformes: Trichomycteridae), a new species from the Doce River Basin, Eastern Brazil. Zootaxa 2012, 3352, 60–68. [Google Scholar] [CrossRef]
  72. De Pinna, M.C.C. A new subfamily of Trichomycteridae (Teleostei, Siluriformes), lower loricarioid relationships and a discussion on the impact of additional taxa for phylogenetic analysis. Zool. J. Linn. Soc. 1992, 106, 175–229. [Google Scholar] [CrossRef]
  73. Lima, S.M.Q.; Costa, W.J.E.M. Trichomycterus giganteus (Siluriformes: Loricarioidea: Trichomycteridae): A new catfish from the Rio Guandu basin, southeastern Brazil. Zootaxa 2004, 761, 1–6. [Google Scholar] [CrossRef] [Green Version]
  74. Lima, S.M.Q.; Lazzarotto, H.; Costa, W.J.E.M. A new species of Trichomycterus (Siluriformes: Trichomycteridae) from lagoa Feia drainage, southeastern Brazil. Neotrop. Ichthyol. 2008, 6, 315–322. [Google Scholar] [CrossRef]
  75. Alencar, A.R.; Costa, W.J.E.M. Description of two new species of the catfish genus Trichomycterus from southeastern Brazil (Siluriformes: Trichomycteridae). Zootaxa 2004, 744, 1–8. [Google Scholar] [CrossRef] [Green Version]
  76. Barbosa, M.A.; Costa, W.J.E.M. Trichomycterus puriventris (Teleostei: Siluriformes: Trichomycteridae), a new species of catfish from the rio Paraiba do Sul basin, southeastern Brazil. Vertebr. Zool. 2012, 62, 155–160. [Google Scholar]
  77. Datovo, A.; de Pinna, M.C.C. A new species of Ituglanis representing the southernmost record of the genus, with comments on phylogenetic relationships (Teleostei: Siluriformes: Trichomycteridae). J. Fish Biol. 2014, 84, 314–327. [Google Scholar] [CrossRef] [PubMed]
  78. Fernandez, L.; Arroyave, J.; Schaefer, S.A. Emerging patterns in phylogenetic studies of trichomycterid catfishes (Teleostei, Siluriformes) and the contribution of Andean diversity. Zool. Scr. 2021. [Google Scholar] [CrossRef]
Figure 1. Phylogenetic tree generated by Maximum Likelihood analysis using IQ-tree for 44 species of Trichomycterus and 21 outgroups, combining four genes (COI, CYTB, MYH6, and RAG2, with a total of 2974 bp) and 52 osteological characters (the most external taxon Nematogenys inermis is not depicted). Asterisks indicate species endemic to the Rio Paraiba do Sul basin. For support values for each node, see Table 1.
Figure 1. Phylogenetic tree generated by Maximum Likelihood analysis using IQ-tree for 44 species of Trichomycterus and 21 outgroups, combining four genes (COI, CYTB, MYH6, and RAG2, with a total of 2974 bp) and 52 osteological characters (the most external taxon Nematogenys inermis is not depicted). Asterisks indicate species endemic to the Rio Paraiba do Sul basin. For support values for each node, see Table 1.
Taxonomy 01 00013 g001
Figure 2. Mesethmoidal region and adjacent bones: (AF) left and middle portion, detailed dorsal view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Paracambeva) itatiayae; (C) Trichomycterus (Trichomycterus) immaculatus; (D) Trichomycterus (Trichomycterus) maculosus; (E) Trichomycterus (Cryptocambeva) mirissumba; (F) Trichomycterus (Psammocambeva) auroguttatus. (G,H) left and middle portion, general dorsal view, including latero-sensory dermal canals: (G) Trichomycterus (Paracambeva) septemradiatus; (H) Trichomycterus (Humboldtglanis) albinotatus. (I,J) middle portion, general ventral view: (I) Trichomycterus (Paracambeva) reinhardti; (J) Trichomycterus (Cryptocambeva) brasiliensis. Larger stippling represents cartilages. The numbers are characters, followed by character states after dots, which are numbered according to Appendix C.
Figure 2. Mesethmoidal region and adjacent bones: (AF) left and middle portion, detailed dorsal view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Paracambeva) itatiayae; (C) Trichomycterus (Trichomycterus) immaculatus; (D) Trichomycterus (Trichomycterus) maculosus; (E) Trichomycterus (Cryptocambeva) mirissumba; (F) Trichomycterus (Psammocambeva) auroguttatus. (G,H) left and middle portion, general dorsal view, including latero-sensory dermal canals: (G) Trichomycterus (Paracambeva) septemradiatus; (H) Trichomycterus (Humboldtglanis) albinotatus. (I,J) middle portion, general ventral view: (I) Trichomycterus (Paracambeva) reinhardti; (J) Trichomycterus (Cryptocambeva) brasiliensis. Larger stippling represents cartilages. The numbers are characters, followed by character states after dots, which are numbered according to Appendix C.
Taxonomy 01 00013 g002
Figure 3. Left jaw suspensorium, excluding autopalatine, and opercular series, lateral view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Paracambeva) itatiayae; (C) Trichomycterus (Psammocambeva) pradensis; (D) Trichomycterus (Trichomycterus) quintus; (E) Trichomycterus (Humboldtglanis) albinotatus; (F) Trichomycterus (Psammocambeva) auroguttatus. Larger stippling represents cartilages. The numbers are characters, followed by character states after dots, which are numbered according to Appendix C.
Figure 3. Left jaw suspensorium, excluding autopalatine, and opercular series, lateral view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Paracambeva) itatiayae; (C) Trichomycterus (Psammocambeva) pradensis; (D) Trichomycterus (Trichomycterus) quintus; (E) Trichomycterus (Humboldtglanis) albinotatus; (F) Trichomycterus (Psammocambeva) auroguttatus. Larger stippling represents cartilages. The numbers are characters, followed by character states after dots, which are numbered according to Appendix C.
Taxonomy 01 00013 g003
Figure 4. Postero-lateral region of neurocranium and adjacent bones, left portion, dorsal view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Trichomycterus) maculosus; (C) Trichomycterus (Cryptocambeva) mirissumba; (D) Trichomycterus (Humboldtglanis) albinotatus. The numbers are characters, followed by character states after dots, which are numbered according to Appendix C.
Figure 4. Postero-lateral region of neurocranium and adjacent bones, left portion, dorsal view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Trichomycterus) maculosus; (C) Trichomycterus (Cryptocambeva) mirissumba; (D) Trichomycterus (Humboldtglanis) albinotatus. The numbers are characters, followed by character states after dots, which are numbered according to Appendix C.
Taxonomy 01 00013 g004
Figure 5. Left shoulder girdle, posterior portion, ventral view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Trichomycterus) nigricans. Larger stippling represents cartilages. The number is the character, followed by character states after the dot, which is numbered according to Appendix C.
Figure 5. Left shoulder girdle, posterior portion, ventral view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Trichomycterus) nigricans. Larger stippling represents cartilages. The number is the character, followed by character states after the dot, which is numbered according to Appendix C.
Taxonomy 01 00013 g005
Figure 6. Left pelvic bone, ventral view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Paracambeva) reinhardti; (C) Trichomycterus (Paracambeva) itatiayae; (D) Trichomycterus (Trichomycterus) nigroauratus; (E) Trichomycterus (Humboldtglanis) albinotatus; (F) Trichomycterus (Cryptocambeva) mirissumba; (G) Trichomycterus (Psammocambeva) pantherinus. Larger stippling represents cartilages. Numbers are characters followed by character states after a dot, which are numbered according to Appendix C. Abbreviations: amp: antero-median process; eap: external anterior process; iap: internal anterior process; pp: posterior process.
Figure 6. Left pelvic bone, ventral view: (A) Trichomycterus (Megacambeva) giganteus; (B) Trichomycterus (Paracambeva) reinhardti; (C) Trichomycterus (Paracambeva) itatiayae; (D) Trichomycterus (Trichomycterus) nigroauratus; (E) Trichomycterus (Humboldtglanis) albinotatus; (F) Trichomycterus (Cryptocambeva) mirissumba; (G) Trichomycterus (Psammocambeva) pantherinus. Larger stippling represents cartilages. Numbers are characters followed by character states after a dot, which are numbered according to Appendix C. Abbreviations: amp: antero-median process; eap: external anterior process; iap: internal anterior process; pp: posterior process.
Taxonomy 01 00013 g006
Figure 7. Three anterior-most free vertebrae, ventral view: (A) Trichomycterus punctulatus; (B) Cambeva davisi; (C) Trichomycterus (Paracambeva) itatiayae; (D) Trichomycterus (Trichomycterus) nigroauratus; (E) Trichomycterus (Cryptocambeva) mirissumba; (F) Trichomycterus (Psammocambeva) auroguttatus. Larger stippling represents cartilages. The numbers are characters followed by character states after dots, which are numbered according to Appendix C. Abbreviations: db: parapophysis dorsal branch; p1–3: parapophysis 1–3; r1–3: rib 1–3; v1–3: free vertebra 1–3; vb: parapophysis ventral branch.
Figure 7. Three anterior-most free vertebrae, ventral view: (A) Trichomycterus punctulatus; (B) Cambeva davisi; (C) Trichomycterus (Paracambeva) itatiayae; (D) Trichomycterus (Trichomycterus) nigroauratus; (E) Trichomycterus (Cryptocambeva) mirissumba; (F) Trichomycterus (Psammocambeva) auroguttatus. Larger stippling represents cartilages. The numbers are characters followed by character states after dots, which are numbered according to Appendix C. Abbreviations: db: parapophysis dorsal branch; p1–3: parapophysis 1–3; r1–3: rib 1–3; v1–3: free vertebra 1–3; vb: parapophysis ventral branch.
Taxonomy 01 00013 g007
Figure 8. Mid-lateral region of neurocranium, left portion, dorsal view: (A) Trichomycterus (Trichomycterus) maculosus; (B) Trichomycterus (Psammocambeva) auroguttatus. The numbers are characters followed by character states after dots, which are numbered according to Appendix C. Abbreviation: spp: sphenotic-prootic-pterosphenoid complex.
Figure 8. Mid-lateral region of neurocranium, left portion, dorsal view: (A) Trichomycterus (Trichomycterus) maculosus; (B) Trichomycterus (Psammocambeva) auroguttatus. The numbers are characters followed by character states after dots, which are numbered according to Appendix C. Abbreviation: spp: sphenotic-prootic-pterosphenoid complex.
Taxonomy 01 00013 g008
Figure 9. Schematic representation of the head in live specimens, left lateral view, of four sympatric species: (A) Trichomycterus (Trichomycterus) quintus (B) Trichomycterus (Psammocambeva) auroguttatus (C) Trichomycterus (Humboldtglanis) albinotatus (D) Trichomycterus (Cryptocambeva) mirissumba.
Figure 9. Schematic representation of the head in live specimens, left lateral view, of four sympatric species: (A) Trichomycterus (Trichomycterus) quintus (B) Trichomycterus (Psammocambeva) auroguttatus (C) Trichomycterus (Humboldtglanis) albinotatus (D) Trichomycterus (Cryptocambeva) mirissumba.
Taxonomy 01 00013 g009
Table 1. Node support in phylogenetic analyses (Figure 1), comprising Shimodaira-Hasegawa-like procedure support (SH-aLRT) with values above 70%, the Bayesian-like transformation of SH-aLRT support (aBayes) with values above 0.7, and the ultrafast bootstrap support (UFBoot) with values above 70%, for the Maximum Likelihood (ML) analysis, and bootstrap values above 50% for the Maximum Parsimony (MP) analysis.
Table 1. Node support in phylogenetic analyses (Figure 1), comprising Shimodaira-Hasegawa-like procedure support (SH-aLRT) with values above 70%, the Bayesian-like transformation of SH-aLRT support (aBayes) with values above 0.7, and the ultrafast bootstrap support (UFBoot) with values above 70%, for the Maximum Likelihood (ML) analysis, and bootstrap values above 50% for the Maximum Parsimony (MP) analysis.
NodeMLMP
SH-aLRTaBayesUFBootBootstrap
1---100
297.4110097
3100110099
4 (Microcambevinae)100110099
5 (Trichomycterinae)98.4110098
684.5174-
785.8176-
899.6110078
91001100100
10 (CST-clade)99.8110095
11 (Cambeva + Scleronema)99.9110099
12 (Scleronema)1001100100
1399.91100100
1498.61100100
15 (Cambeva)89.019584
1666.7-79-
1796.6195-
1899.1110083
1999.41100100
2073.30.892-
21 (Trichomycterus)85.119289
2278.60.882-
23 (Paracambeva) 1001100100
24 (T. reinhardti group)97.319999
2598.8110097
2696.919792
27-1--
281001100100
29100110099
3083.70.99799
3183.1191-
32 (sg. Trichomycterus)1001100100
33 (T. nigroauratus group)1001100100
34 (T. nigricans group)86.219672
3598.3110094
3697.61100100
37 91193-
38 (Psammocambeva)98.9110089
39 (T. pradensis group)50.60.780-
40 87.1196-
41 (T. travassosi group)100110094
42----
4392.3198-
4485.9187-
4592.1197-
46--85-
4799.2110095
48 (Humboldtglanis)99.41100100
49 (Cryptocambeva)1001100100
50 92.419955
51 96.219958
529619992
5389.619797
5473-95-
551001100100
5663.6-9492
57 92.6199-
Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Share and Cite

MDPI and ACS Style

Costa, W.J.E.M. Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae). Taxonomy 2021, 1, 160-191. https://0-doi-org.brum.beds.ac.uk/10.3390/taxonomy1020013

AMA Style

Costa WJEM. Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae). Taxonomy. 2021; 1(2):160-191. https://0-doi-org.brum.beds.ac.uk/10.3390/taxonomy1020013

Chicago/Turabian Style

Costa, Wilson J. E. M. 2021. "Comparative Osteology, Phylogeny and Classification of the Eastern South American Catfish Genus Trichomycterus (Siluriformes: Trichomycteridae)" Taxonomy 1, no. 2: 160-191. https://0-doi-org.brum.beds.ac.uk/10.3390/taxonomy1020013

Article Metrics

Back to TopTop