Harnessing Epigenetic Phenomena for Crop Breeding and Production

A special issue of Agronomy (ISSN 2073-4395). This special issue belongs to the section "Crop Breeding and Genetics".

Deadline for manuscript submissions: closed (31 May 2022) | Viewed by 3188

Special Issue Editors


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Guest Editor
1. Southern Cross Plant Science, Southern Cross University, Lismore, NSW 2480, Australia
2. School Biosciences, University of Nottingham, Nottingham NG7 2RD, UK
Interests: crop epigenetics; comparative genomics; G × E interaction; recombination; trait genetics; informatics and ontologies

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Guest Editor
1. Saskatoon Research and Development Centre, Agriculture & Agri-Food Canada, Saskatoon, SK, Canada
2. Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada
Interests: epigenetics; polyploidy; comparative genomics; stress physiology

Special Issue Information

Dear Colleagues,

Managing cultivar-specific interactions with environment remains a major challenge for crop production. Epigenetics generally refers to changes in gene expression not resulting from alterations in the primary DNA sequence, with many fundamental mechnisms identified and characterised in plants. This includes epigenetic marks of genomic DNA methylation and histone modification that affect chromatin conformation and are involved in processes such as RNA-directed DNA methylation (RdDM), programmed demethylation, parental imprinting and transposon activation/deactivation. Meanwhile, diverse developmental and response phenomena are affected by processes such as miRNA and lncRNA signalling and regulation, and RNAi interference.

Many crop plants have complex genomes of polyploid origin, a high load of transposons and DNA methylation, and have evolved to co-opt epigenetic processes into various aspects of development, mediating responses to environmental cues. Whilst epigenetics has become integral to understanding and managing numerous human conditions and diseases, progress has been slower in translating insights into practical outcomes for crop breeding and production.

Within this issue, we aim to highlight how translational research may contribute to the development of resilient and responsive crop cultivars, as well as epigenetic interventions that may become integral to crop production and protection. We therefore call for papers that represent the range of current and potential opportunities within this active research field.

Prof. Dr. Graham J. King
Dr. Stephen Robinson
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Agronomy is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2600 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • crop epigenetics
  • transposons
  • epigenomic selection
  • DNA methylation
  • RNAi
  • miRNA
  • lncRNA
  • genotype × environment interaction

Published Papers (1 paper)

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Review

15 pages, 1324 KiB  
Review
Can Epigenetics Guide the Production of Better Adapted Cultivars?
by Haley Turcotte, Julia Hooker, Bahram Samanfar and Jean-Sébastien Parent
Agronomy 2022, 12(4), 838; https://0-doi-org.brum.beds.ac.uk/10.3390/agronomy12040838 - 29 Mar 2022
Cited by 6 | Viewed by 2696
Abstract
As the global population continues to grow, food demand will be reaching levels which current agricultural practices cannot meet. This projected demand combined with the negative impacts of climate change on crop production calls for more careful breeding efforts to develop better adapted [...] Read more.
As the global population continues to grow, food demand will be reaching levels which current agricultural practices cannot meet. This projected demand combined with the negative impacts of climate change on crop production calls for more careful breeding efforts to develop better adapted plants more tolerant to climate fluctuations. Fortunately, the development of molecular biology techniques like genome, transcriptome and epigenome sequencing now offer new approaches to help classical breeding meet these challenges. This review focuses on the potential of epigenetic approaches, particularly the creation of epigenetic markers (epi-markers) for guiding the selection process in breeding programs. Many studies have indeed successfully linked stable epigenetic modifications to different plant traits of interest but research on the applicability of using epi-markers in breeding programs is still scarce. This review emphasises the current progress that has been made with regards to the usefulness of epi-markers in selective plant breeding programs and the gaps in knowledge that still need to be addressed. It highlights the importance of pursuing research efforts to confirm the value of epi-markers for crop development in the years to come in order to meet the agricultural challenges of the 21st century. Full article
(This article belongs to the Special Issue Harnessing Epigenetic Phenomena for Crop Breeding and Production)
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