Diversity

As a worldwide sanitary insect pest, the housefly Musca domestica can carry and transmit more than 100 human pathogens without suffering any illness itself, indicative of the high efficiency of its innate immune system. Antimicrobial peptides (AMPs) are the effectors of the innate immune system of multicellular organisms and establish the first line of defense to protect hosts from microbial infection. To explore the molecular diversity of the M. domestica AMPs and related evolutionary basis, we conducted a systematic survey of its full AMP components based on a combination of computational approaches. These components include the cysteine-containing peptides (MdDefensins, MdEppins, MdMuslins, MdSVWCs and MdCrustins), the linear α-helical peptides (MdCecropins) and the specific amino acid-rich peptides (MdDomesticins, MdDiptericins, MdEdins and MdAttacins). On this basis, we identified multiple genetic mechanisms that could have shaped the molecular and structural diversity of the M. domestica AMPs, including: (1) Gene duplication; (2) Exon duplication via shuffling; (3) Protein terminal variations; (4) Evolution of disulfide bridges via compensation. Our results not only enlarge the insect AMP family members, but also offer a basic platform for further studying the roles of such molecular diversity in contributing to the high efficiency of the housefly antimicrobial immune system. Full article

The Brazilian subterranean ichthyofauna is distinguished worldwide by high taxonomic and phylogenetic diversity, involving at least 30 exclusively subterranean (troglobitic) lineages. This may be explained by high native epigean diversty, allied to opportunities for colonization and genetic isolation in the subterranean biotope, thence originating troglobites. An updated list of Brazilian troglobitic lineages and a review of previous hypotheses on modes of colonization and differentiation in subterranean habitats are presented with fresh data and models. Colonization of and isolation in the subterranean biotope are independent processes, usually separate over time. Access to subterranean habitats varies from the (sub)horizontal through sinkholes and resurgences of base-level streams and vadose tributaries to the vertical by shallow and deep phreatic waters through the hyporheic zone. Phenotypic differentiation of subterranean populations originating troglobites may be achieved by various, non-mutually exclusive modes of genetic isolation, e.g., directly in base-level streams and upper tributaries through the extinction of epigean populations, due to drainage discontinuation in dry paleoclimatic phases (or by other causes), by topographic isolation due to a lowering of the regional base level and karst catchments or by parapatric differentiation. Differentiation may also be a consequence of transition from lotic to lentic waters in flooded caves, and from shallow to deep phreatic habitats. Full article

Salinity is a known factor in shaping population dynamics and community structure through direct and indirect effects on aquatic ecosystems. Salinity changes further influence food webs through competition and predation. The responses of Moina macrocopa (Cladocera) collected from Setiu Wetland lagoon (Terengganu) was evaluated through manipulative laboratory experiments to understand the ability of M. macrocopa to tolerate high salinity stress. Specifically, the fatty acid composition, growth, survival, and reproduction of this cladocerans species was examined. Sodium chloride (NaCl) as used in the treatments water with the concentration 0, 4, 6, 8, 12, and 15 salinity. Fatty acid levels were determined using Gas Chromatography and Mass Spectrophotometry (GC-MS). The results indicated that optimal conditions produced the highest fatty acid content, especially the polyunsaturated fatty acid content, such as EPA (eicosapentaenoic acid), ALA (alpha-linoleic acid), ARA (arachidonic acid), and DHA (docosahexaenoic acid). Furthermore, M. macrocopa survival was best at salinity 0, with a percentage of 98%, whereas the opposite occurred at salinity 15, with approximately 20% of viable animals surviving. Besides, M. macrocopa also showed the highest reproduction rate at salinity 0 (e.g., average initial age of reproduction, 4.33 ± 0.58 days) compared with other salinities level. Interestingly, the difference in growth at different salinities was not evident, an unusual finding when considering adverse effects such as osmoregulation pressure on the organism. Based on the results, we conclude that M. macrocopa can only tolerate salinity below salinity 8 and cannot withstand stressful environmental conditions associated with salinities above 8. Full article

The study examined the extent of the cetacean strandings in Italy, with a particular focus on Sicily Island. The paper aimed to contribute to the description of a pattern that contemplates the “regular and rare” cetacean species passage along the Sicilian coast. The estimate of marine cetacean strandings was extrapolated from the National Strandings Data Bank (BDS—Banca Dati Spiaggiamenti) and evaluated according to a subdivision in three coastal subregions: the Tyrrhenian sub-basin (northern Sicilian coast), the Ionian sub-basin (eastern Sicilian coast), and the Channel of Sicily (southern Sicilian coast). Along the Italian coast, more than 4880 stranding events have been counted in the period 1990–2019. Most of these were recorded in five Italian regions: Apulia, Sicily, Sardinia, Tuscany, and Calabria. Approximately 15% of the recorded strandings in Italy occurred on the Sicilian coast. In Sicily Island, 725 stranded cetaceans were recorded in 709 stranding events, resulting in approximately 20 carcasses every year; the total number of specimens identified to species level was 539. The distribution along the Sicilian coast was the following: 312 recorded in the Tyrrhenian sub-basin, 193 in the Ionian sub-basin, and 220 in the Channel of Sicily. Stenella coeruleoalba was the species that can be considered as the stable record along the time-lapse investigated, and some rare species have been recorded as well. The role of Sicily Island as a sentinel territory of the cetacean distribution for the central Mediterranean Sea and as a region receiving a marine resource suitable for the scientific research and cetological museum collections is discussed herein. Full article

The arrangement of habitat features via historical or contemporary events can strongly influence genomic and demographic connectivity, and in turn affect levels of genetic diversity and resilience of populations to environmental perturbation. The rusty blackbird (Euphagus carolinus) is a forested wetland habitat specialist whose population size has declined sharply (78%) over recent decades. The species breeds across the expansive North American boreal forest region, which contains a mosaic of habitat conditions resulting from active natural disturbance regimes and glacial history. We used landscape genomics to evaluate how past and present landscape features have shaped patterns of genetic diversity and connectivity across the species’ breeding range. Based on reduced-representation genomic and mitochondrial DNA, genetic structure followed four broad patterns influenced by both historical and contemporary forces: (1) an east–west partition consistent with vicariance during the last glacial maximum; (2) a potential secondary contact zone between eastern and western lineages at James Bay, Ontario; (3) insular differentiation of birds on Newfoundland; and (4) restricted regional gene flow among locales within western and eastern North America. The presence of genomic structure and therefore restricted dispersal among populations may limit the species’ capacity to respond to rapid environmental change. Full article

Determining migratory connectivity within and among diverse taxa is crucial to their conservation. Insect migrations involve millions of individuals and are often spectacular. However, in general, virtually nothing is known about their structure. With anthropogenically induced global change, we risk losing most of these migrations before they are even described. We used stable hydrogen isotope (δ²H) measurements of wings of seven species of butterflies (Libytheana carinenta, Danaus gilippus, Phoebis sennae, Asterocampa leilia, Euptoieta claudia, Euptoieta hegesia, and Zerene cesonia) salvaged as roadkill when migrating in fall through a narrow bottleneck in northeast Mexico. These data were used to depict the probabilistic origins in North America of six species, excluding the largely local E. hegesia. We determined evidence for long-distance migration in four species (L. carinenta, E. claudia, D. glippus, Z. cesonia) and present evidence for panmixia (Z. cesonia), chain (Libytheana carinenta), and leapfrog (Danaus gilippus) migrations in three species. Our investigation underlines the utility of the stable isotope approach to quickly establish migratory origins and connectivity in butterflies and other insect taxa, especially if they can be sampled at migratory bottlenecks. We make the case for a concerted effort to atlas butterfly migrations using the stable isotope approach. Full article

Determining if the vast soil health degradations across the seven major soil groups (orders) of Sub-Saharan Africa (SSA) can be managed on the basis of a one-size-fits-all or location-specific approach is limited by a lack of soil group-based understanding of soil health degradations. We used the relationship between changes in nematode population dynamics relative to food and reproduction (enrichment, EI) and resistance to disturbance (structure, SI) indices to characterize the soil food web (SFW) and soil health conditions of Ferralsol, Lithosol and Nitosol soil groups in Ghana, Kenya and Malawi. We applied bivariate correlations of EI, SI, soil pH, soil organic carbon (SOC), and texture (sand, silt and clay) to identify integrated indicator parameters, and principal component analysis (PCA) to determine how all measured parameters, soil groups, and countries align. A total of 512 georeferenced soil samples from disturbed (agricultural) and undisturbed (natural vegetation) landscapes were analyzed. Nematode trophic group abundance was low and varied by soil group, landscape and country. The resource-limited and degraded SFW conditions separated by soil groups and by country. EI and SI correlation with SOC varied by landscape, soil group or country. PCA alignment showed separation of soil groups within and across countries. The study developed the first biophysicochemical proof-of-concept that the soil groups need to be treated separately when formulating scalable soil health management strategies in SSA. Full article

In fire-suppressed landscapes, managers make difficult decisions about devoting limited resources for prescribed fire. Using GIS-based multicriteria decision analysis, we developed a model assessing ecological need for prescribed fire on Michigan’s state-owned lands, ranging from fire-dependent prairies, savannas, barrens, and oak and pine forests to fire-intolerant mesic forests, and including a diversity of wetlands. The model integrates fine-scale field-collected and broad-scale GIS data to identify where prescribed fire needs are greatest. We describe the model’s development and architecture, present results at multiple scales, introduce the concepts of “fire gaps” and “fire sink”, and rate the fire needs of more than 1.8 million hectares into one of six fire needs classes. Statewide, fire needs increase with decreasing latitude. The highest and lowest needs occur in southwestern Michigan and the Upper Peninsula, respectively, but actual fire application rates for these regions are inverted. The model suggests burn rates should be increased 2.2 to 13.4 times to burn all lands with greater than high fire needs. The model identifies regional patterns; highlights specific sites; and illustrates the disparity of fire needs and fire application. The modeling framework is broadly applicable to other geographies and efforts to prioritize stewardship of biodiversity at multiple scales. Full article

The Rusty Blackbird (Euphagus carolinus) is an imperiled migratory songbird that breeds in and near the boreal wetlands of North America. Our objective was to investigate factors associated with Rusty Blackbird wetland use, including aquatic invertebrate prey and landscape features, to better understand the birds’ habitat use. Using single-season occupancy modeling, we assessed breeding Rusty Blackbird use of both active and inactive beaver-influenced wetlands in New Hampshire and Maine, USA. We conducted timed, unlimited-radius point counts of Rusty Blackbirds at 60 sites from May to July 2014. Following each point count, we sampled aquatic invertebrates and surveyed habitat characteristics including percent mud cover, puddle presence/absence, and current beaver activity. We calculated wetland size using aerial imagery and calculated percent conifer cover within a 500 m buffer of each site using the National Land Cover Database 2011. Percent mud cover and invertebrate abundance best predicted Rusty Blackbird use of wetlands. Rusty Blackbirds were more likely to be found in sites with lower percent mud cover and higher aquatic invertebrate abundance. Sites with Rusty Blackbird detections had significantly higher abundances of known or likely prey items in the orders Amphipoda, Coleoptera, Diptera, Odonata, and Trichoptera. The probability of Rusty Blackbird detection was 0.589 ± 0.06 SE. This study provides new information that will inform habitat conservation for this imperiled species in a beaver-influenced landscape. Full article

We review the variety of morphological, physiological and behavioral modifications that annelids have acquired to cope with environments either unsuitable for, or on the limits of, survival for most animals. We focus on polychaetes (excluding sipunculans and echiurans) and clitellates (oligochaetes and leeches) and source information mostly from the primary literature. We identified many modifications common to both polychaetes and clitellates, and others that are specific to one or the other group. For example, certain land-adapted polychaetes show reduction in nuchal organs, epidermal ciliation and receptor cells, and other coastal polychaetes use adhesive glands and glue-reinforced tubes to maintain position in surf zones, while oligochaetes, with their simple body plans, appear to be ‘pre-adapted’ to life underground. Modifications common to both groups include the ability to construct protective cocoons, make cryoprotective substances such as antifreeze and heat shock proteins, develop gills, transform their bodies into a home for symbiotic chemoautotrophic bacteria, metabolize contaminants, and display avoidance behaviors. Convergent evolution in both directions has enabled annelids to transition from salt water to freshwater, sea to land via beaches, freshwater to soil, and surface water to subterranean water. A superficially simple worm-like body and a mostly benthic/burrowing lifestyle has facilitated radiation into every conceivable environment, making annelids among the most common and diverse animal groups on the planet. Full article

Trait matching between interacting species may foster diversity. Thus, high epiphyte diversity in tropical forests may be partly due to the high diversity of trees and some degree of host specificity. However, possible trait matching between epiphyte and host is basically unexplored. Since the epiphytic habitat poses particular challenges to plants, their trait correlations should differ from terrestrial plants, but to what extent is unclear as epiphytes are underrepresented or missing in the large trait databases. We quantified 28 traits of 99 species of vascular epiphytes in a lowland forest in Panama that were related to plant size, leaf, stem, and root morphology; photosynthetic mode; and nutrient concentrations. We analyzed trait covariation, community weighted means, and functional diversity for assemblages on stems and in crowns of four tree species. We found intriguing differences between epiphytes and terrestrial plants regarding trait covariation in trait relations between plant maximal height, stem specific density, specific root length, and root tissue den-sity, i.e., stem and root economic spectra. Regarding host specificity, we found strong evidence for environmental filtering of epiphyte traits, but only in tree crowns. On stems, community weighted means differed in only one case, whereas > 2/3 of all traits differed in tree crowns. Although we were only partly able to interpret these differences in the light of tree trait differences, these findings mark an important step towards a functional understanding of epiphyte host specificity. Full article

The inselbergs of the Central Highlands of Madagascar are one of many ‘micro-hotspots’ of biodiversity on the island, particularly for Orchidaceae. In this region are several genera that have a large number of endemic species that are in serious decline or edging towards extinction. Studies relating to diversity of orchids and their fungal partners (both mycorrhizal and non-mycorrhizal root associates) deserve more attention, as climate change and human induced decline in resilience of species in the wild is at an all-time high. Identification of mycorrhizal fungi (MF) via conventional seed baited-protocorms has limitations for large scale studies and its application for time-bound conservation projects. The paper describes the value of understanding fungal diversity in the roots of orchids at different stages of maturity. The first part of the study was a preliminary investigation mainly to identify culturable Rhizoctonia endophytes, and the second part looked at all life forms of available taxa together with associated soil characteristics. We isolated and identified 19 putative MF from 18 of the 50 taxa spread over an area of 250 sq. km, covering three life forms, growth phases of the orchid taxa, and habitat types. In the rest of the taxa, we were unable to detect any putative MF, but had varying numbers of non-mycorrhizal endophytes. We also found that diversity of putative MF was higher in plants from soils with the lowest P levels recorded. Putative mycorrhizal OTUs were predominantly from the Tulasnella lineage, followed by Ceratobasidium and Serendipita. Within a small subset of samples, a difference in colonised endophytes depending on the collection season was observed. In vitro germination studies using 10 OTUs of mycorrhizal fungi in 14 orchid species showed mostly generalist associations. When orchid seed and fungal sources were studied irrespective of habitat, life form, and distance from each other (orchid seed and fungal source), compatibility for symbiotic seed germination was observed in most cases. Issues with the identification of compatible MF and symbiotic system of seed germination are discussed. Full article

Species distribution models (SDMs) are commonly used with climate only to predict animal distribution changes. This approach however neglects the evolution of other components of the niche, like food resource availability. SDMs are also commonly used with plants. This also suffers limitations, notably an inability to capture the fertilizing effect of the rising CO₂ concentration strengthening resilience to water stress. Alternatively, process-based dynamic vegetation models (DVMs) respond to CO₂ concentration. To test the impact of the plant modelling method to model plant resources of animals, we studied the distribution of a Bolivian macaw, assuming that, under future climate, DVMs produce more conservative results than SDMs. We modelled the bird with an SDM driven by climate. For the plant, we used SDMs or a DVM. Under future climates, the macaw SDM showed increased probabilities of presence over the area of distribution and connected range extensions. For plants, SDMs did not forecast overall response. By contrast, the DVM produced increases of productivity, occupancy and diversity, also towards higher altitudes. The results offered positive perspectives for the macaw, more optimistic with the DVM than with the SDMs, than initially assumed. Nevertheless, major common threats remain, challenging the short-term survival of the macaw. Full article

Clinostomum metacercariae are common endoparasites of fish and frogs. In this study, we examine taxonomic identity and developmental strategy of Clinostomum metacercariae infesting reed frogs Hyperolius kivuensis and H. viridiflavus in Rwanda. Moreover, we evaluate the impact of infestation on demographic and morphological life-history traits of the hosts. Morphological and molecular features, particularly genital morphology and COX1 sequences, provided evidence that the metacercariae belong to C. chabaudi Vercammen-Grandjean, 1960. Depending on the host’s defensive behavior and the availability of resources, metacercariae develop either as sedentary “yellow grubs” encysted in the lymphatic sacs or mouth of the host or as initially encysted, but later free-ranging individuals invading the host´s body cavity. Nutrition on lymphatic fluid within the cyst leads to yellow-colored gut content, feeding on blood or host tissue, to brownish green gut content in free-ranging individuals. Almost all metacercariae opted for the first developmental strategy in H. kivuensis, whereas the second strategy dominated in metacercariae infesting H. viridiflavus. Hyperolius kivuensis suffered significant morphological modifications, when infested with encysted metacercariae. Both developmental modes permitted a coexistence with the host of less than one year. We hypothesize that the presence of alternative development modes is an adaptation of C. chabaudi to cope with resource limitation within host-produced cysts. Full article

Many ungulates are spotted as neonates. This trait is unique to individuals, making their identification feasible from remote cameras. Key deer (Odocoileus virginianus clavium) are an endangered subspecies of white-tailed deer endemic to the lower Florida Keys, U.S.A. Habitat loss and hunting were historical drivers of population decline but recent studies report positive associations of key deer with urbanization. Using opposing camera traps at 56 sites throughout the National Key Deer Refuge on Big Pine Key, we used spot patterns to uniquely identify and estimate fawn abundance with N-mixture models. We further compared those inferences to models informed by adult doe counts to see how well tracking adult females alone corresponded with fawn habitat associations. Our results indicated that fawn abundance was negatively associated with increasing elevation and human trails, contrary to models based on adult female observations alone. The lowest elevations where fawns were most abundant were associated with dense wetland plant communities, which were likely selected for thermal cover and warrant further investigation given that those areas are most vulnerable to sea-level rise. Our methods showcase the utility of identifying neonates from camera trap photos and draw attention to possible misaligned inferences when tracking adult females in isolation. Full article

We investigated population parameters using the capture-mark-recapture method (Ituglanis passensis and I. bambui) and visual censuses (I. epikasrticus and I. ramiroi). The four species are regionally threatened (Brazilian Red List) and occur in caves of Terra Ronca State Park, São Domingos region, Central Brazil. We conducted seven fieldtrips across three years of dry seasons. For the capture-mark-recapture method, a 400 m long stream inside Passa Três cave, where I. passensis occurs and a 300 m long reach of an upper tributary where I. bambui occurs inside Angélica cave were divided into 20 and 17 study sections, respectively. Catfishes were hand-netted, measured (standard length), weighed, marked by subcutaneous injection of biocompatible pigments, and released. The four species show medium-to-low mean population densities (0.03 ind/m² 0.7 ind/m²). Capture-mark-recapture data pointed to a relatively small population size for I. passensis, restricted to a 1600 m long stream inside Passa Três cave (N = 719) and for I. bambui (N = 246; 300 m of epikarstic drainage). Ituglanis passensis and I. bambui move along relatively small areas with a restricted home range. We observed recruitment patterns and a trend of decrease in condition factor during the dry seasons for I. bambui but not for I. passensis, suggesting that epikarstic waters are probably more limiting concerning food input. Ituglanis passensis and I. bambui showed low growth and consequently high longevity, corroborated by captivity data (20 years). We suggest urgent actions and long-term monitoring projects to effectively protect this unique and endemic ichthyofauna. Full article

The fossil record of birds in South America is still very patchy. One of the most remarkable birds found in Miocene deposits from Patagonia is Brontornis burmeisteri Moreno and Mercerat, 1891. This giant flightless bird is known by multiple incomplete specimens that represent a few portions of the skeleton, mainly hindlimb bones. Since the XIX century, Brontornis was considered as belonging to or closely related to phorusrhacoid birds. In contrast to previous work, by the end of 2000 decade it was proposed that Brontornis belongs to Galloanserae. This proposal was recently contested based on a large dataset including both phorusrhacoids and galloanserine birds, that concluded Brontornis was nested among cariamiform birds, and probably belonged to phorusrhacoids. The aim of the present contribution is to re-evaluate the phylogenetic affinities of Brontornis. Based on modified previous datasets, it is concluded that Brontornis does belong to Galloanserae, and that it represents a member of a largely unknown radiation of giant graviportal birds from South America. Full article

Currently, there is a demand for more energy-efficient lighting sources, however, light emitted by different lighting systems differs in primary properties such as intensity, propagation direction, and wavelength spectrum, among others, and these properties may affect insect light attraction. Despite the energetic benefits of light-emitting diodes (LED) as street light systems, their ecological impacts on insects have not yet been tested on a wide range of taxa. Using an experimental approach, we showed that LED street lights lead to a reduction in the total number of insects captured with light traps in a wide range of families. Coleoptera and Lepidoptera orders were the most sensitive groups to ecological light pollution in the study area. We suggest that LED was the least attractive light system for most of the affected groups both because of its very little emitted short-wavelength light and because of its lower light intensity. We expect that the more and more widespread use of LED lights as a measure to reduce economic costs of outdoor lighting should lead to a lower attraction to street lights in most of the affected insect taxa and to diminish the negative impacts of artificial light attraction on the ecosystems. Full article