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Genetic and Epigenetic Regulations of Tumor Progression and Metastasis 2.0

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Oncology".

Deadline for manuscript submissions: closed (31 July 2023) | Viewed by 4860

Special Issue Editors


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Guest Editor
Cancer Research Institute, Biomedical Research Center of the Slovak Academy of Sciences, 845 05 Bratislava, Slovakia
Interests: genetics; epigenetics; pancreatic cancer; uveal melanoma; liquid biopsy
Special Issues, Collections and Topics in MDPI journals
Molecular Epidemiology and Predictive Tumor Markers Group, Medical Oncology Research Laboratory, Ramón y Cajal Health Research Institute (IRYCIS), Carretera Colmenar Km 9100, 28034 Madrid, Spain
Interests: pancreatic cancer; cancer genetics; biomarkers; liquid biopsy; cell-free DNA
Special Issues, Collections and Topics in MDPI journals

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Guest Editor
1st Department of Propaedeutic Surgery, Hippocration Hospital, Athens Medical School, National and Kapodistrian University of Athens, 11527 Athens, Greece
Interests: apoptosis; autophagy; senescence; tumor microenvironment; cancer genetics; metastasis
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

Metastasis is the main contributor to cancer-related morbidity and mortality. Although the completion of the Human Genome Project and the technical advances in next-generation sequencing allowed for remarkable progress in understanding the genetic basis of numerous cancers, many questions remain unresolved. The extensive sequencing effort indicates that mutations themselves are not the causal factors in the determination of metastatic phenotypes. What are then the molecular events which drive the change from a primary tumor to a metastatic cell? The progressive gain or loss of genetic mutations and epigenetic marks can be, to varying degrees, involved in the individual steps of a metastatic cascade. This Special Issue focuses on deciphering their role and understanding their interactions in proliferation, invasion, epithelial-to-mesenchymal transition, migration, metastatic niche formation, tumor heterogeneity, and drug resistance. Moreover, the goal is to highlight the diverse capacities of the tumor microenvironment to induce both beneficial and adverse consequences for tumorigenesis. In this context, studies of disseminated tumor cells in the bone marrow and circulating tumor cells in peripheral blood would provide critical insight into cancer biology. Liquid biopsy assays, therefore, represent an important tool for the further elucidation of tumor heterogeneity through single-cell analyses, opening novel perspectives for personalized disease monitoring and tailored therapeutic approaches.

Since IJMS is a journal of molecular science, pure clinical studies will not be suitable; however, clinical submissions including biomolecular experiments focusing on the above-mentioned topics are welcomed.

Dr. Bozena Smolkova
Dr. Julie Earl
Dr. Agapi Kataki
Guest Editors

Manuscript Submission Information

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Keywords

  • genetics
  • epigenetics
  • biomarkers
  • cancer metastasis
  • tumor cell invasion
  • circulating cancer cells
  • circulating tumor DNA
  • epithelial–mesenchymal transition
  • metastatic niche
  • tumor microenvironment

Published Papers (3 papers)

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Research

14 pages, 3609 KiB  
Article
Data Mining Suggests That CXCL14 Gene Silencing in Colon Cancer Is Due to Promoter Methylation
by Yanjing Wang, Siyi Wang, Yuchen Niu, Buyong Ma and Jingjing Li
Int. J. Mol. Sci. 2023, 24(22), 16027; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms242216027 - 07 Nov 2023
Cited by 2 | Viewed by 869
Abstract
CXCL14 is one of the most evolutionarily conserved members of the chemokine family and is constitutionally expressed in multiple organs, suggesting that it is involved in the homeostasis maintenance of the system. CXCL14 is highly expressed in colon epithelial cells and shows obvious [...] Read more.
CXCL14 is one of the most evolutionarily conserved members of the chemokine family and is constitutionally expressed in multiple organs, suggesting that it is involved in the homeostasis maintenance of the system. CXCL14 is highly expressed in colon epithelial cells and shows obvious gene silencing in clinical colon cancer samples, suggesting that its silencing is related to the immune escape of cancer cells. In this paper, we analyzed the expression profiles of multiple human clinical colon cancer datasets and mouse colon cancer models to reveal the variation trend of CXCL14 expression during colitis, colon polyps, primary colon cancer, and liver metastases. The relationship between CXCL14 gene silencing and promoter hypermethylation was revealed through the colorectal carcinoma methylation database. The results suggest that CXCL14 is a tumor suppressor gene in colorectal carcinoma which is activated first and then silenced during the process of tumor occurrence and deterioration. Promoter hypermethylation is the main cause of CXCL14 silencing. The methylation level of CXCL14 is correlated with the anatomic site of tumor occurrence, positively correlated with patient age, and associated with prognosis. Reversing the hypermethylation of CXCL14 may be an epigenetic therapy for colon cancer. Full article
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26 pages, 3666 KiB  
Article
Integrated Microarray-Based Data Analysis of miRNA Expression Profiles: Identification of Novel Biomarkers of Cisplatin-Resistance in Testicular Germ Cell Tumours
by Jan Roška, João Lobo, Danica Ivovič, Lenka Wachsmannová, Thomas Mueller, Rui Henrique, Carmen Jerónimo, Miroslav Chovanec and Dana Jurkovičová
Int. J. Mol. Sci. 2023, 24(3), 2495; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms24032495 - 27 Jan 2023
Cited by 6 | Viewed by 1851
Abstract
Testicular germ cell tumours (TGCTs) are the most common solid malignancy among young men, and their incidence is still increasing. Despite good curability with cisplatin (CDDP)-based chemotherapy, about 10% of TGCTs are non-responsive and show a chemoresistant phenotype. To further increase TGCT curability, [...] Read more.
Testicular germ cell tumours (TGCTs) are the most common solid malignancy among young men, and their incidence is still increasing. Despite good curability with cisplatin (CDDP)-based chemotherapy, about 10% of TGCTs are non-responsive and show a chemoresistant phenotype. To further increase TGCT curability, better prediction of risk of relapse and early detection of refractory cases is needed. Therefore, to diagnose this malignancy more precisely, stratify patients more accurately and improve decision-making on treatment modality, new biomarkers are still required. Numerous studies showed association of differential expressions of microRNAs (miRNAs) with cancer. Using microarray analysis followed by RT-qPCR validation, we identified specific miRNA expression patterns that discriminate chemoresistant phenotypes in TGCTs. Comparing CDDP-resistant vs. -sensitive TGCT cell lines, we identified miR-218-5p, miR-31-5p, miR-125b-5p, miR-27b-3p, miR-199a-5p, miR-214-3p, let-7a and miR-517a-3p as significantly up-regulated and miR-374b-5p, miR-378a-3p, miR-20b-5p and miR-30e-3p as significantly down-regulated. In patient tumour samples, we observed the highest median values of relative expression of miR-218-5p, miR-31-5p, miR-375-5p and miR-517a-3p, but also miR-20b-5p and miR-378a-3p, in metastatic tumour samples when compared with primary tumour or control samples. In TGCT patient plasma samples, we detected increased expression of miR-218-5p, miR-31-5p, miR-517a-3p and miR-375-5p when compared to healthy individuals. We propose that miR-218-5p, miR-31-5p, miR-375-5p, miR-517-3p, miR-20b-5p and miR-378a-3p represent a new panel of biomarkers for better prediction of chemoresistance and more aggressive phenotypes potentially underlying metastatic spread in non-seminomatous TGCTs. In addition, we provide predictions of the targets and functional and regulatory networks of selected miRNAs. Full article
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14 pages, 2613 KiB  
Article
Whole Transcriptome Analysis of Breast Cancer Tumors during Neoadjuvant Chemotherapy: Association with Hematogenous Metastasis
by Marina K. Ibragimova, Matvey M. Tsyganov and Nikolai V. Litviakov
Int. J. Mol. Sci. 2022, 23(22), 13906; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms232213906 - 11 Nov 2022
Cited by 1 | Viewed by 1337
Abstract
The assessment of molecular genetic landscape changes during NAC and the relationship between molecular signatures in residual tumors are promising approaches for identifying effective markers of outcome in breast cancer. The majority of the data in the literature present the relationship between the [...] Read more.
The assessment of molecular genetic landscape changes during NAC and the relationship between molecular signatures in residual tumors are promising approaches for identifying effective markers of outcome in breast cancer. The majority of the data in the literature present the relationship between the molecular genetic landscape and the response to NAC or are simply descriptive. The present study aimed to determine changes in expression profiles during NAC and assess the relationship between gene expression and the outcome of patients with luminal B HER2 breast cancer depending on distant hematogenous metastasis. The study included 39 patients with luminal B HER2-BC. The patients received 6–8 courses of NAC, and paired samples consisting of biopsy and surgical materials were analyzed. A full transcriptome microarray analysis was performed using the human Clariom™ S Assay platform (Affymetrix, 3450 Central Expy, Santa Clara, CA, 95051, USA). A comparison of the expression profiles of patients with breast cancer before and after NAC, depending on the status of hematogenous metastasis, was conducted. It was shown that the amount of DEGs in the tumor was reduced by more than six times after NAC. The top 10 signaling pathways were also found, the activity of which varied depending on the status of hematogenous metastasis before and after NAC. In addition, the association of DEGs with hematogenous metastasis in patients with breast cancer was evaluated: MFS was assessed depending on the expression level of 21 genes. It was shown that MFS was significantly associated with the expression level and pattern of nine genes. The expression levels of nine DEGs in the tumors of patients with breast cancer after NAC were significantly correlated with MFS when the status of hematogenous metastasis was taken into account. Full article
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