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Complex Carbohydrates and Glycoconjugates: Structure, Functions and Applications 2023

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Biochemistry".

Deadline for manuscript submissions: closed (30 November 2023) | Viewed by 2554

Special Issue Editor


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Guest Editor
N.D. Zelinsky Institute of Organic Chemistry, Russian Academy of Science, Leninsky pr. 47, 119991 Moscow, Russia
Interests: carbohydrate analysis; carbohydrate structure; glycoconjugates; mass spectrometry; electrospray ionization; MALDI; fragmentation of ions; activation of ions; sample preparation
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Special Issue Information

Dear Colleagues,

The study of carbohydrates has a long history, spanning across two centuries, during which research paved the way from “sweet matter” to glycomics. The complexity of cabohydrates under such studies grew enormously: The term “complex carbohydrates” includes large oligosaccharides (dozens of carbohydrate units) and polysaccharides, both regular and irregular. Carbohydrate studies were inevitably expanded to adjacent areas; this fact is reflected by the general term “glycoconjugate” (a compound, in which molecule carbohydrate part(s) is/are covalently bonded with noncarbohydrate part(s)).

At present, carbohydrate science is an integral part of molecular biology along with genomics and proteomics. It includes structural studies of glycans, glycoproteins, proteoglycans, glycolipids, and low-molecular and complex glycosides of plant, animal, fungal, and bacterial origin. Supramolecular structural studies such as cell wall reconstruction are developed. The functional studies of carbohydrates concern molecular recognition such as carbohydrate–lectin or glycoside–enzyme interactions, cell recognition (normal and in pathologies), viral adhesion/penetration, oligo- and polysaccharide biosynthesis, and many other phenomena. In such studies, artificial carbohydrate-containing molecular probes (synthetic glycoconjugates) are widely used now.

Structural and functional studies are extremely stimulated by the progress of instrumental methods, especially in chromatography, electrophoresis, multidimensional NMR spectrometry, ultrahigh-resolution mass spectrometry, and surface plasmon resonance (SPR). There is no modern carbohydrate analysis without hyphenated techniques, such as HPLC-MS. To navigate in a global massive of carbohydrate information, interactive, curated databases are created; at the moment, glycoinformatics is an integral part of glycoscience which keeps together our knowledge in different branches of glycochemistry and glycobiology.

This Special Issue welcomes the submission of original research papers, critical or comprehensive reviews that demonstrate or summarize significant advances in carbohydrate chemistry and biochemistry. Targeted synthesis, isolation and structure determination of complex carbohydrates and glycoconjugates are subjects eligible for publication especially if these studies accompanies with elucidation of biological activities. Papers devoted to development of applications of instrumental methods in carbohydrate chemistry and biology are especially welcome in this Special Issue. Feature papers, opinions and comments are acceptable if they stimulate fruitful discussion on problems in carbohydrate chemistry and biochemistry. Nontargeted syntheses and studies with no molecular aspects are out of the scope. All molecular structures of novel compounds must be firmly established. Clinical trials and animal and cell testings are eligible only if they are strongly needed to support hypotheses or theories concerning structure–function correlations and are not suitable if no molecular aspects are considered.

Dr. Alexander O. Chizhov
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. International Journal of Molecular Sciences is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. There is an Article Processing Charge (APC) for publication in this open access journal. For details about the APC please see here. Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • complex carbohydrates
  • glycoconjugates
  • structure
  • oligosaccharides
  • polysaccharides
  • glycomics
  • carbohydrate analysis
  • carbohydrate synthesis
  • glycoside bond
  • glycoproteins
  • proteoglycans
  • molecular recognition
  • lectin
  • cell wall
  • cell surface
  • molecular probe
  • biosynthesis of complex carbohydrates
  • high-resolution mass spectrometry
  • nuclear magnetic resonance
  • chromatography
  • capillary electrophoresis
  • glycoinformatics
  • databases

Published Papers (2 papers)

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Research

15 pages, 10687 KiB  
Article
Structural and Genetic Identification of the O-Antigen from an Escherichia coli Isolate, SD2019180, Representing a Novel Serogroup
by Jing Wang, Chunjun Qin, Yujuan Xu, Jian Yin, Jing Hu and Xi Guo
Int. J. Mol. Sci. 2023, 24(20), 15040; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms242015040 - 10 Oct 2023
Viewed by 689
Abstract
The O-antigen is one of the outermost surface components of Gram-negative bacteria. Its large structural variation provides the molecular basis for bacterial serological diversity. Here, we established the structure of the O-antigen from an Escherichia coli strain, SD2019180, which appeared to be completely [...] Read more.
The O-antigen is one of the outermost surface components of Gram-negative bacteria. Its large structural variation provides the molecular basis for bacterial serological diversity. Here, we established the structure of the O-antigen from an Escherichia coli strain, SD2019180, which appeared to be completely different from the known E. coli serogroups. The O-antigen tetrasaccharide biological repeating unit was identified as → 2)-[β-d-GlcpA-(1 → 4)]-[α-d-Galp-(1 → 3)]-α-l-Fucp-(1 → 3)-α-d-GlcpNAc-(1 →. Furthermore, we analyzed the O-antigen gene cluster of SD2019180 and confirmed its role in O-antigen synthesis by using deletion and complementation experiments. Our findings indicate that SD2019180 is a novel serogroup of Escherichia coli. Full article
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12 pages, 2008 KiB  
Article
Synthesis of a New Glycoconjugate with Di--Psicose Anhydride Structure
by Young Sung Jung, Hyoung-Geun Kim, Min-Cheol Lim, Ji-Su Park, Soonok Sa and Miyoung Yoo
Int. J. Mol. Sci. 2022, 23(21), 12827; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms232112827 - 24 Oct 2022
Viewed by 1233
Abstract
Demand for healthy diets has led researchers to explore new saccharide as sucrose alternatives. -Psicose, the C-3 epimer of -fructose, has a similar sweetness intensity to sucrose but contributes fewer calories. This study proposes a disaccharide with a stable structure derived [...] Read more.
Demand for healthy diets has led researchers to explore new saccharide as sucrose alternatives. -Psicose, the C-3 epimer of -fructose, has a similar sweetness intensity to sucrose but contributes fewer calories. This study proposes a disaccharide with a stable structure derived from -psicose. The compound with a spiro-tricyclic core was generated at 32% conversion via caramelization of -psicose under acidic anhydrous conditions. The compound was identified by high-resolution mass spectrometry and multi-dimensional nuclear magnetic resonance (NMR). The molecular formula was established as C12H20O10 from the molecular weight of m/z 324.1055. Twelve signals were observed by the 13C NMR spectrum. This compound, denoted di--psicose anhydride (DPA), exhibited a lower water solubility (40 g/L) and higher thermal stability (peak temperature = 194.7 °C) than that of -psicose (peak temperature = 126.5 °C). The quantitatively evaluated metal ion scavenging ability of DPA was the best in magnesium (average 98.6 ± 1.1%). This synthesis methodology can provide disaccharides with high stability-reducing heavy metals. Full article
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