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NMR and Mass Spectrometry in Plant Metabolomics, Compound Isolation and Characterisation

A special issue of Molecules (ISSN 1420-3049). This special issue belongs to the section "Analytical Chemistry".

Deadline for manuscript submissions: closed (31 January 2022) | Viewed by 24396

Special Issue Editor

Department of Plant Biology and Crop Sciences, Rothamsted Research, West Common, Harpenden AL5 2JQ, Herts, UK
Interests: plant metabolomics; compound isolation and characterisation by NMR and mass spectrometry
Special Issues, Collections and Topics in MDPI journals

Special Issue Information

Dear Colleagues,

This Special Issue relates to the use of NMR and mass spectroscopy in the field of plant metabolomics and natural product characterisation.

NMR and mass spectrometry are leading techniques that are employed widely in the fields of metabolomics and natural product chemistry. Both techniques are applicable to the study of the small molecule complement of biological systems and as such are able to provide a holistic view of the metabolite complement under varying conditions. For this reason, we find that the techniques are utilised in a growing number of high-throughput screening applications such as chemotaxonomy, substantial equivalence studies, functional genomics, mQTL elucidation, nutritional impact assessment, evaluation of abiotic and biotic stresses as well as more specialist work in labelling studies to elucidate biosynthetic pathways and their regulation. Studies also extend to targeted analyses and both techniques can also provide quantified data, either directly in the case of NMR or via the use of calibration curves for mass spectrometry.

The annotation of metabolomic datasets generally involves the comparison of spectral data to libraries of authentic standards. However, in many cases, it is necessary to structurally characterise peaks that do not appear in such repositories. In these cases, natural products are typically isolated, purified and subjected to an extended suite of NMR and experiments to determine the structural framework of the molecule and to accurately place functional groups or discriminate between isomeric forms. Coupled with high mass accuracy and MSMS fragmentations, the data arising from 1D and 2D NMR experiments are normally required to fully assign the structures of novel molecules. Whilst more time-consuming, this work leads to a more complete metabolomics assessment or, in the case of phytochemical studies, often to the discovery of novel molecules.

Researchers working in the fields of plant metabolomics and natural product chemistry, utilising NMR or mass spectrometry in a significant capacity, are cordially invited to contribute original research papers or reviews to this Special Issue of Molecules.

Dr. Jane Ward
Guest Editor

Manuscript Submission Information

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Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • NMR
  • Mass spectrometry
  • Plant metabolomics
  • Phytochemistry
  • Novel molecules

Related Special Issue

Published Papers (8 papers)

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Research

Jump to: Review

17 pages, 3842 KiB  
Article
Metabonomics Analysis of Stem Extracts from Dalbergia sissoo
by Mengxue Li, Mengying Liu, Bingyi Wang and Lei Shi
Molecules 2022, 27(6), 1982; https://0-doi-org.brum.beds.ac.uk/10.3390/molecules27061982 - 18 Mar 2022
Cited by 6 | Viewed by 2152
Abstract
Dalbergia sissoo is a woody plant with economic and medicinal value. As the pharmacological qualities and properties of the wood from this plant primarily depend on its extractives, in this study, the metabolomic analysis of extractives from its stems was carried out using [...] Read more.
Dalbergia sissoo is a woody plant with economic and medicinal value. As the pharmacological qualities and properties of the wood from this plant primarily depend on its extractives, in this study, the metabolomic analysis of extractives from its stems was carried out using UPLC-MS/MS. A total of 735 metabolites were detected from two groups of samples, heartwood and sapwood, with the largest number of terpenoids in type and the largest number of flavonoids in quantity. The PCA and cluster analysis showed significant differences in the metabolite composition between the two groups. The differential metabolites were mainly organic oxygen compounds, flavonoids, and isoflavones. Among the 105 differential metabolites, 26 metabolites were significantly higher in relative content in sapwood than in heartwood, while the other 79 metabolites were significantly higher in relative content in heartwood than in sapwood. KEGG metabolic pathway enrichment analysis showed that these differential metabolites were mainly enriched in three metabolic pathways: Flavonoid biosynthesis, isoflavonoid biosynthesis, and flavonoid and flavonol biosynthesis. This study provides a reference for metabolomics studies in Dalbergia and other woody plants. Full article
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12 pages, 751 KiB  
Article
Development of a Nuclear Magnetic Resonance Method and a Near Infrared Calibration Model for the Rapid Determination of Lipid Content in the Field Pea (Pisum sativum)
by Philip Wiredu Addo, Philip Ossowski, Sarah MacPherson, Andrée E. Gravel, Rajvinder Kaur, Valerio Hoyos-Villegas, Jaswinder Singh, Valérie Orsat, Marie-Josée Dumont and Mark Lefsrud
Molecules 2022, 27(5), 1642; https://0-doi-org.brum.beds.ac.uk/10.3390/molecules27051642 - 02 Mar 2022
Viewed by 2028
Abstract
Pisum sativum is a leguminous crop suitable for cultivation worldwide. It is used as a forage or dried seed supplement in animal feed and, more recently, as a potential non-traditional oilseed. This study aimed to develop a low-cost, rapid, and non-destructive method for [...] Read more.
Pisum sativum is a leguminous crop suitable for cultivation worldwide. It is used as a forage or dried seed supplement in animal feed and, more recently, as a potential non-traditional oilseed. This study aimed to develop a low-cost, rapid, and non-destructive method for analyzing pea lipids with no chemical modifications that would prove superior to existing destructive solvent extraction methods. Different pea accession seed samples, prepared as either small portions (0.5 mm2) of endosperm or ground pea seed powder for comparison, were subjected to HR-MAS NMR analyses and whole seed samples underwent NIR analyses. The total lipid content ranged between 0.57–3.45% and 1.3–2.6% with NMR and NIR, respectively. Compared to traditional extraction with butanol, hexane-isopropanol, and petroleum ether, correlation coefficients were 0.77 (R2 = 0.60), 0.56 (R2 = 0.47), and 0.78 (R2 = 0.62), respectively. Correlation coefficients for NMR compared to traditional extraction increased to 0.97 (R2 = 0.99) with appropriate correction factors. PLS regression analyses confirmed the application of this technology for rapid lipid content determination, with trends fitting models often close to an R2 of 0.95. A better robust NIR quantification model can be developed by increasing the number of samples with more diversity. Full article
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21 pages, 1593 KiB  
Article
In Vitro Anti-Diabetic Activities and UHPLC-ESI-MS/MS Profile of Muntingia calabura Leaves Extract
by Nur Khaleeda Zulaikha Zolkeflee, Nurul Shazini Ramli, Azrina Azlan and Faridah Abas
Molecules 2022, 27(1), 287; https://0-doi-org.brum.beds.ac.uk/10.3390/molecules27010287 - 04 Jan 2022
Cited by 9 | Viewed by 3135
Abstract
Anti-diabetic compounds from natural sources are now being preferred to prevent or treat diabetes due to adverse effects of synthetic drugs. The decoction of Muntingia calabura leaves was traditionally consumed for diabetes treatment. However, there has not been any published data currently available [...] Read more.
Anti-diabetic compounds from natural sources are now being preferred to prevent or treat diabetes due to adverse effects of synthetic drugs. The decoction of Muntingia calabura leaves was traditionally consumed for diabetes treatment. However, there has not been any published data currently available on the processing effects on this plant’s biological activity and phytochemical profile. Therefore, this study aims to evaluate the effect of three drying methods (freeze-drying (FD), air-drying (AD), and oven-drying (OD)) and ethanol:water ratios (0, 50, and 100%) on in vitro anti-diabetic activities of M. calabura leaves. In addition, an ultrahigh-performance-liquid chromatography–electrospray ionization tandem mass spectrometry (UHPLC-ESI-MS/MS) method was used to characterize the metabolites in the active extract. The FD M. calabura leaves, extracted with 50% ethanol, is the most active extract that exhibits a high α-glucosidase and α-amylase inhibitory activities with IC50 values of 0.46 ± 0.05 and 26.39 ± 3.93 µg/mL, respectively. Sixty-one compounds were tentatively identified by using UHPLC-ESI-MS/MS from the most active extract. Quantitative analysis, by using UHPLC, revealed that geniposide, daidzein, quercitrin, 6-hydroxyflavanone, kaempferol, and formononetin were predominant compounds identified from the active extract. The results have laid down preliminary steps toward developing M. calabura leaves extract as a potential source of bioactive compounds for diabetic treatment. Full article
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10 pages, 1033 KiB  
Article
Microbial Transformation of Prenylquercetins by Mucor hiemalis
by Fubo Han, Yina Xiao and Ik-Soo Lee
Molecules 2020, 25(3), 528; https://0-doi-org.brum.beds.ac.uk/10.3390/molecules25030528 - 25 Jan 2020
Cited by 6 | Viewed by 2423
Abstract
Quercetin, one of the most widely distributed flavonoids, has been found to show various biological activities including antioxidant, anticancer, and anti-inflammatory effects. It has been reported that bioactivity enhancement of flavonoids has often been closely associated with nuclear prenylation, as shown in 8-prenylquercetin [...] Read more.
Quercetin, one of the most widely distributed flavonoids, has been found to show various biological activities including antioxidant, anticancer, and anti-inflammatory effects. It has been reported that bioactivity enhancement of flavonoids has often been closely associated with nuclear prenylation, as shown in 8-prenylquercetin and 5′-prenylquercetin. It has also been revealed in many studies that the biological activities of flavonoids could be improved after glucosylation. Three prenylated quercetins were prepared in this study, and microbial transformation was carried out in order to identify derivatives of prenylquercetins with increased water solubility and improved bioavailability. The fungus M. hiemalis was proved to be capable of converting prenylquercetins into more polar metabolites and was selected for preparative fermentation. Six novel glucosylated metabolites were obtained and their chemical structures were elucidated by NMR and mass spectrometric analyses. All the microbial metabolites showed improvement in water solubility. Full article
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13 pages, 1736 KiB  
Article
Microbial Transformation of Licochalcones
by Yina Xiao, Fubo Han and Ik-Soo Lee
Molecules 2020, 25(1), 60; https://0-doi-org.brum.beds.ac.uk/10.3390/molecules25010060 - 23 Dec 2019
Cited by 8 | Viewed by 2654
Abstract
Microbial transformation of licochalcones B (1), C (2), D (3), and H (4) using the filamentous fungi Aspergillus niger and Mucor hiemalis was investigated. Fungal transformation of the licochalcones followed by chromatographic separations led to [...] Read more.
Microbial transformation of licochalcones B (1), C (2), D (3), and H (4) using the filamentous fungi Aspergillus niger and Mucor hiemalis was investigated. Fungal transformation of the licochalcones followed by chromatographic separations led to the isolation of ten new compounds 514, including one hydrogenated, three dihydroxylated, three expoxidized, and three glucosylated metabolites. Their structures were elucidated by combined analyses of UV, IR, MS, NMR, and CD spectroscopic data. Absolute configurations of the 2″,3″-diols in the three dihydroxylated metabolites were determined by ECD experiments according to the Snatzke’s method. The trans-cis isomerization was observed for the metabolites 7, 11, 13, and 14 as evidenced by the analysis of their 1H-NMR spectra and HPLC chromatograms. This could be useful in better understanding of the trans-cis isomerization mechanism of retrochalcones. The fungal transformation described herein also provides an effective method to expand the structural diversity of retrochalcones for further biological studies. Full article
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Review

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15 pages, 2555 KiB  
Review
NMR Characterization of Lignans
by Roberto Consonni and Gianluca Ottolina
Molecules 2022, 27(7), 2340; https://0-doi-org.brum.beds.ac.uk/10.3390/molecules27072340 - 05 Apr 2022
Cited by 4 | Viewed by 2731
Abstract
Lignans are particularly interesting secondary metabolites belonging to the phenyl-propanoid biosynthetic pathway. From the structural point of view, these molecules could belong to the aryltetralin, arylnaphtalene, or dibenzylbutyrolactone molecular skeleton. Lignans are present in different tissues of plants but are mainly accumulated in [...] Read more.
Lignans are particularly interesting secondary metabolites belonging to the phenyl-propanoid biosynthetic pathway. From the structural point of view, these molecules could belong to the aryltetralin, arylnaphtalene, or dibenzylbutyrolactone molecular skeleton. Lignans are present in different tissues of plants but are mainly accumulated in seeds. Extracts from plant tissues could be characterized by using the NMR-based approach, which provides a profile of aromatic molecules and detailed structural information for their elucidation. In order to improve the production of these secondary metabolites, elicitors could effectively stimulate lignan production. Several plant species are considered in this review with a particular focus on Linum species, well recognized as the main producer of lignans. Full article
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26 pages, 6298 KiB  
Review
Use of Gas Chromatography-Mass Spectrometry Techniques (GC-MS, GC-MS/MS and GC-QTOF) for the Characterization of Photooxidation and Autoxidation Products of Lipids of Autotrophic Organisms in Environmental Samples
by Jean-François Rontani
Molecules 2022, 27(5), 1629; https://0-doi-org.brum.beds.ac.uk/10.3390/molecules27051629 - 01 Mar 2022
Cited by 11 | Viewed by 4882
Abstract
This paper reviews applications of gas chromatography-mass spectrometry techniques for the characterization of photooxidation and autoxidation products of lipids of senescent phototrophic organisms. Particular attention is given to: (i) the selection of oxidation products that are sufficiently stable under environmental conditions and specific [...] Read more.
This paper reviews applications of gas chromatography-mass spectrometry techniques for the characterization of photooxidation and autoxidation products of lipids of senescent phototrophic organisms. Particular attention is given to: (i) the selection of oxidation products that are sufficiently stable under environmental conditions and specific to each lipid class and degradation route; (ii) the description of electron ionization mass fragmentation of trimethylsilyl derivatives of these compounds; and (iii) the use of specific fragment ions for monitoring the oxidation of the main unsaturated lipid components of phototrophs. The techniques best geared for this task were gas chromatography-quadrupole-time of flight to monitor fragment ions with very high resolution and accuracy, and gas chromatography-tandem mass spectrometry to monitor very selective transitions in multiple reaction monitoring mode. The extent of the degradation processes can only be estimated if the oxidation products are unaffected by fast secondary oxidation reactions, as it is notably the case of ∆5-sterols, monounsaturated fatty acids, chlorophyll phytyl side-chain, and di- and triterpenoids. In contrast, the primary degradation products of highly branched isoprenoid alkenes possessing more than one trisubstituted double bond, alkenones, carotenoids and polyunsaturated fatty acids, appear to be too unstable with respect to secondary oxidation or other reactions to serve for quantification in environmental samples. Full article
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17 pages, 1629 KiB  
Review
Metabolite Fingerprinting Based on 1H-NMR Spectroscopy and Liquid Chromatography for the Authentication of Herbal Products
by Florentinus Dika Octa Riswanto, Anjar Windarsih, Endang Lukitaningsih, Mohamad Rafi, Nurrulhidayah A. Fadzilah and Abdul Rohman
Molecules 2022, 27(4), 1198; https://0-doi-org.brum.beds.ac.uk/10.3390/molecules27041198 - 10 Feb 2022
Cited by 9 | Viewed by 3442
Abstract
Herbal medicines (HMs) are regarded as one of the traditional medicines in health care to prevent and treat some diseases. Some herbal components such as turmeric and ginger are used as HMs, therefore the identification and confirmation of herbal use are very necessary. [...] Read more.
Herbal medicines (HMs) are regarded as one of the traditional medicines in health care to prevent and treat some diseases. Some herbal components such as turmeric and ginger are used as HMs, therefore the identification and confirmation of herbal use are very necessary. In addition, the adulteration practice, mainly motivated to gain economical profits, may occur by substituting the high price of HMs with lower-priced ones or by addition of certain chemical constituents known as Bahan Kimia Obat (chemical drug ingredients) in Indonesia. Some analytical methods based on spectroscopic and chromatographic methods are developed for the authenticity and confirmation of the HMs used. Some approaches are explored during HMs authentication including single-component analysis, fingerprinting profiles, and metabolomics studies. The absence of reference standards for certain chemical markers has led to exploring the fingerprinting approach as a tool for the authentication of HMs. During fingerprinting-based spectroscopic and chromatographic methods, the data obtained were big, therefore the use of chemometrics is a must. This review highlights the application of fingerprinting profiles using variables of spectral and chromatogram data for authentication in HMs. Indeed, some chemometrics techniques, mainly pattern recognition either unsupervised or supervised, were applied for this purpose. Full article
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