The Role of Genomics in Bioengineering

A special issue of Processes (ISSN 2227-9717). This special issue belongs to the section "Biological Processes and Systems".

Deadline for manuscript submissions: closed (31 October 2021) | Viewed by 3564

Special Issue Editor


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Guest Editor
Department of Genetics, Cytology and Bioengineering, Voronezh State University, 394018 Voronezh, Russia
Interests: genetics; NGS, mutation; food biotechnology and safety

Special Issue Information

Dear Colleagues,

We are inviting manuscript submission for a Special Issue on “The Role of Genomics in Bioengineering”.

Biological engineering, or bioengineering, is the application of principles of biology and the tools of engineering to create tangible, useful, and economically viable products. Genomics is the study of whole genomes of organisms and incorporates elements from genetics. Genomics uses a combination of recombinant DNA, high-performance DNA-sequencing methods, and bioinformatics to sequence, assemble, and analyze the structure and function of entire genomes. It differs from “classical genetics” in that it considers an organism’s full complement of hereditary material rather than one gene or one gene product at a time.

This Special Issue aims to provide a platform for researchers to share the latest advancements in genomics and their application in bioengineering. It will cover the following key areas:

  • Role of genomics in the identification and prediction of an organism’s properties;
  • Role of genomics in drug development;
  • Application of high-throughput sequencing for the study of organisms with new properties;
  • Genome engineering technologies;
  • Genome editing with CRISPR-Cas9; 
  • Techniques and applications in genome design, advances, and challenges;
  • Application of metagenomic approaches for studying microorganisms important for the food and drug industry;
  • Novel genome assembly methods;
  • Large-scale analysis of genomic, transcriptomic, and epigenomic data to predict the impact of genetic manipulations on model organisms.

Prof. Dr. Vasily N. Popov
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Processes is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2400 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • genomics
  • bioengineering
  • next-generation sequencing
  • genome editing
  • metagenomics
  • model organisms
  • transgenic organisms
  • genome analysis
  • promoters
  • gene expression

Published Papers (1 paper)

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Research

13 pages, 2955 KiB  
Article
Metagenomic Analysis of Suansun, a Traditional Chinese Unsalted Fermented Food
by Yaping Hu, Xiaodong Chen, Jie Zhou, Wenxuan Jing and Qirong Guo
Processes 2021, 9(9), 1669; https://0-doi-org.brum.beds.ac.uk/10.3390/pr9091669 - 16 Sep 2021
Cited by 8 | Viewed by 2539
Abstract
Suansun, made from fresh bamboo shoots fermented without salt, is a traditional food in China’s southern region and is popular for its nutritious and unique flavor. To comprehensively understand the microbial species and characteristics of suansun, Illumina HiSeq metagenomic sequencing technology was used [...] Read more.
Suansun, made from fresh bamboo shoots fermented without salt, is a traditional food in China’s southern region and is popular for its nutritious and unique flavor. To comprehensively understand the microbial species and characteristics of suansun, Illumina HiSeq metagenomic sequencing technology was used to sequence suansun’s fermentation broth obtained from six traditional producing areas in southern China, and the microbial community structure, diversity, and functional genes were analyzed. A total of 8 phyla, 16 classes, 30 orders, 63 families, 92 genera, and 156 species of microorganisms were identified in the suansun samples, with Lactiplantibacillus predominating, accounting for up to 81% of the species, among which 12 species, including Lactiplantibacillus plantarum, were the main species. A total of 12,751 unigenes were annotated to 385 metabolic pathway classes, of which 2927 unigenes were involved in carbohydrate metabolism. Lactiplantibacillus fermentum, Lactiplantibacillus plantarum, and Lactiplantibacillus brucei were involved in the metabolism of most nutrients and flavor substances in suansun. Overall, these results provide insights into the suansun microbiota and shed light on the fermentation processes carried out by complex microbial communities. Full article
(This article belongs to the Special Issue The Role of Genomics in Bioengineering)
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