Life: Computational Genomics Applications in Life Sciences
Author Contributions
Acknowledgments
Conflicts of Interest
References
- Orlov, Y.L.; Baranova, A.V.; Tatarinova, T.V. Bioinformatics Methods in Medical Genetics and Genomics. Int. J. Mol. Sci. 2020, 21, 6224. [Google Scholar] [CrossRef] [PubMed]
- Orlov, Y.L.; Anashkina, A.A.; Klimontov, V.V.; Baranova, A.V. Medical Genetics, Genomics and Bioinformatics Aid in Understanding Molecular Mechanisms of Human Diseases. Int. J. Mol. Sci. 2021, 22, 9962. [Google Scholar] [CrossRef] [PubMed]
- Orlov, Y.L.; Baranova, A.V. Editorial: Bioinformatics of Genome Regulation and Systems Biology. Front. Genet. 2020, 11, 625. [Google Scholar] [CrossRef] [PubMed]
- Voropaeva, E.N.; Orlov, Y.L.; Pospelova, T.I.; Gurageva, A.A.; Voevoda, M.I.; Maksimov, V.N.; Seregina, O.B.; Churkina, M.I. The rs78378222 prevalence and the copy loss of the protective allele A in the tumor tissue of diffuse large B-cell lymphoma. PeerJ 2020, 8, e10335. [Google Scholar] [CrossRef]
- Orlov, Y.L.; Baranova, A.; Hofestädt, R.; Kolchanov, N.A. Computational genomics at BGRS\SB-2016: Introductory note. BMC Genom. 2016, 17, 195–198. [Google Scholar] [CrossRef] [Green Version]
- Baranova, A.V.; Klimontov, V.V.; Letyagin, A.Y.; Orlov, Y.L. Medical genomics research at BGRS-2018. BMC Med Genom. 2019, 12, 36. [Google Scholar] [CrossRef] [Green Version]
- Orlov, Y.L.; Galieva, E.R.; Melerzanov, A.V. Computer genomics research at the bioinformatics conference series in Novosibirsk. BMC Genom. 2019, 20, 537. [Google Scholar] [CrossRef]
- Baranova, A.V.; Orlov, Y.L. The papers presented at 7th Young Scientists School “Systems Biology and Bioinformatics” (SBB’15): Introductory Note. BMC Genet. 2016, 17, S20. [Google Scholar] [CrossRef] [Green Version]
- Orlov, Y.L.; Baranova, A.V.; Tatarinova, T.V.; Kolchanov, N.A. Genetics at Belyaev Conference—2017: Introductory note. BMC Genet. 2017, 18, 116. [Google Scholar] [CrossRef] [Green Version]
- Shumny, V.K. To the centenary of the birth of outstanding evolutionist Dmitri Konstantinovich Belyaev. Vavilov J. Genet. Breed. 2017, 21, 387–391. (In Russian) [Google Scholar] [CrossRef] [Green Version]
- Orlov, Y.L.; Baranova, A.V.; Hofestädt, R.; Kolchanov, N.A. Genomics at Belyaev conference—2017. BMC Genom. 2018, 19, 79. [Google Scholar] [CrossRef] [PubMed]
- Song, B.; Jiang, M.; Gao, L. RiboNT: A Noise-Tolerant Predictor of Open Reading Frames from Ribosome-Protected Footprints. Life 2021, 11, 701. [Google Scholar] [CrossRef]
- Xiao, Z.; Huang, R.; Xing, X.; Chen, Y.; Deng, H.; Yang, X. De novo annotation and characterization of the translatome with ribosome profiling data. Nucleic Acids Res. 2018, 46, e61. [Google Scholar] [CrossRef] [Green Version]
- Igoshin, A.; Yudin, N.; Aitnazarov, R.; Yurchenko, A.A.; Larkin, D.M. Whole-Genome Resequencing Points to Candidate DNA Loci Affecting Body Temperature under Cold Stress in Siberian Cattle Populations. Life 2021, 11, 959. [Google Scholar] [CrossRef] [PubMed]
- Sweet-Jones, J.; Lenis, V.P.; Yurchenko, A.A.; Yudin, N.S.; Swain, M.; Larkin, D.M. Genotyping and Whole-Genome Resequencing of Welsh Sheep Breeds Reveal Candidate Genes and Variants for Adaptation to Local Environment and Socioeconomic Traits. Front. Genet. 2021, 12, 612492. [Google Scholar] [CrossRef] [PubMed]
- Yurchenko, A.A.; Deniskova, T.; Yudin, N.S.; Dotsev, A.V.; Khamiruev, T.N.; Селионова, М.; Egorov, S.V.; Reyer, H.; Wimmers, K.; Brem, G.; et al. High-density genotyping reveals signatures of selection related to acclimation and economically important traits in 15 local sheep breeds from Russia. BMC Genom. 2019, 20, 294. [Google Scholar] [CrossRef]
- Getmantseva, L.; Kolosova, M.; Bakoev, F.; Zimina, A.; Bakoev, S. Genomic Regions and Candidate Genes Linked to Capped Hock in Pig. Life 2021, 11, 510. [Google Scholar] [CrossRef]
- Bakoev, S.; Kolosov, A.; Bakoev, F.; Kostyunina, O.; Bakoev, N.; Romanets, T.; Koshkina, O.; Getmantseva, L. Analysis of Homozygous-by-Descent (HBD) Segments for Purebred and Crossbred Pigs in Russia. Life 2021, 11, 861. [Google Scholar] [CrossRef]
- Getmantseva, L.; Bakoev, S.; Bakoev, N.; Karpushkina, T.; Kostyunina, O. Mitochondrial DNA Diversity in Large White Pigs in Russia. Animals 2020, 10, 1365. [Google Scholar] [CrossRef]
- Bakoev, S.; Getmantseva, L.; Kostyunina, O.; Bakoev, N.; Prytkov, Y.; Usatov, A.; Tatarinova, T.V. Genome-wide analysis of genetic diversity and artificial selection in Large White pigs in Russia. PeerJ 2021, 9, e11595. [Google Scholar] [CrossRef] [PubMed]
- Poltavskaya, E.G.; Fedorenko, O.Y.; Kornetova, E.G.; Loonen, A.J.M.; Kornetov, A.N.; Bokhan, N.A.; Ivanova, S.A. Study of Early Onset Schizophrenia: Associations of GRIN2A and GRIN2B Polymorphisms. Life 2021, 11, 997. [Google Scholar] [CrossRef]
- Fedorenko, O.Y.; Mikhalitskaya, E.V.; Toshchakova, V.A.; Loonen, A.J.M.; Bokhan, N.A.; Ivanova, S.A. Association of PIP4K2A Polymorphisms with Alcohol Use Disorder. Genes 2021, 12, 1642. [Google Scholar] [CrossRef]
- Boiko, A.S.; Pozhidaev, I.V.; Paderina, D.Z.; Bocharova, A.V.; A Mednova, I.; Fedorenko, O.Y.; Kornetova, E.G.; Loonen, A.J.; Semke, A.V.; A Bokhan, N.; et al. Search for Possible Associations of FTO Gene Polymorphic Variants with Metabolic Syndrome, Obesity and Body Mass Index in Schizophrenia Patients. Pharm. Pers. Med. 2021, 14, 1123–1131. [Google Scholar] [CrossRef]
- Babenko, V.; Babenko, R.; Gamieldien, J.; Markel, A. FTO haplotyping underlines high obesity risk for European populations. BMC Med. Genom. 2019, 12, 46. [Google Scholar] [CrossRef] [PubMed]
- Boiko, A.; Mednova, I.; Kornetova, E.; Gerasimova, V.; Kornetov, A.; Loonen, A.; Bokhan, N.; Ivanova, S. Cytokine Level Changes in Schizophrenia Patients with and without Metabolic Syndrome Treated with Atypical Antipsychotics. Pharmaceuticals 2021, 14, 446. [Google Scholar] [CrossRef] [PubMed]
- Trifonova, E.; Klimenko, A.; Mustafin, Z.; Lashin, S.; Kochetov, A. Do Autism Spectrum and Autoimmune Disorders Share Predisposition Gene Signature Due to mTOR Signaling Pathway Controlling Expression? Int. J. Mol. Sci. 2021, 22, 5248. [Google Scholar] [CrossRef]
- Orlov, Y.; Galieva, A.; Orlova, N.; Ivanova, E.; Mozyleva, Y.; Anashkina, A. Reconstruction of gene network associated with Parkinson disease for gene targets search. Biomeditsinskaya Khimiya 2021, 67, 222–230. (In Russian) [Google Scholar] [CrossRef]
- Upadhyai, P.; Suresh, G.; Parit, R.; Das, R. Genomic and Ancestral Variation Underlies the Severity of COVID-19 Clinical Manifestation in Individuals of European Descent. Life 2021, 11, 921. [Google Scholar] [CrossRef] [PubMed]
- Di Maria, E.; Latini, A.; Borgiani, P.; Novelli, G. Genetic variants of the human host influencing the coronavirus-associated phenotypes (SARS, MERS and COVID-19): Rapid systematic review and field synopsis. Hum. Genom. 2020, 14, 30. [Google Scholar] [CrossRef]
- Orlov, Y.L.; Tatarinova, T.V.; Anashkina, A.A. Bioinformatics Applications to Reveal Molecular Mechanisms of Gene Expression Regulation in Model Organisms. Int. J. Mol. Sci. 2021, 22, 11973. [Google Scholar] [CrossRef]
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Orlov, Y.L.; Anashkina, A.A. Life: Computational Genomics Applications in Life Sciences. Life 2021, 11, 1211. https://0-doi-org.brum.beds.ac.uk/10.3390/life11111211
Orlov YL, Anashkina AA. Life: Computational Genomics Applications in Life Sciences. Life. 2021; 11(11):1211. https://0-doi-org.brum.beds.ac.uk/10.3390/life11111211
Chicago/Turabian StyleOrlov, Yuriy L., and Anastasia A. Anashkina. 2021. "Life: Computational Genomics Applications in Life Sciences" Life 11, no. 11: 1211. https://0-doi-org.brum.beds.ac.uk/10.3390/life11111211