The Many Faces of Autophagy: Balancing Survival and Cell Death

A special issue of Biomolecules (ISSN 2218-273X). This special issue belongs to the section "Cellular Biochemistry".

Deadline for manuscript submissions: closed (31 December 2022) | Viewed by 12102

Special Issue Editor


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Guest Editor
Department of Biomolecular Sciences, Universita degli Studi di Urbino Carlo Bo, Urbino, Italy
Interests: apoptotic and autophagic pathway; stem cells; exosomes and extracellular vesicles; intercellular communication; adhesion molecules; lysosomal and mitochondria network; flow cytometry; confocal mycroscopy; optimization of antineoplastic drugs (evaluation of their biologic effects)

Special Issue Information

Dear Colleagues,

Macroautophagy (hereafter referred to as autophagy) is a degradation pathway whereby cytosolic double-membrane-bound compartments termed autophagosomes engulf cytoplasmic constituents such as sub-cellular organelles and microbial pathogens and target them for lysosomal degradation. Although in many cases, autophagy contributes to cell death, it has a protective and pro-survival function. Autophagy and apoptosis are two fundamental biological mechanisms that may cooperate or be antagonistic, and both are involved in deciding the fate of cells in physiological or pathological conditions. The functional relationship between apoptosis (‘self-killing’) and autophagy (‘self-eating’) is intricate. Under normal conditions, autophagy is kept at a basal level to maintain cellular homeostasis and to preserve cell integrity by eliminating long-lived, overproduced, and aggregation-prone proteins or dysfunctional organelles such as damaged mitochondria. Under severe or chronic stress, excessive or insufficient autophagy can lead to the accumulation of a large amount of self-degradation or toxic substances, ultimately leading to cell death, which is closely associated with the pathogenesis of various cancers, as well as neurodegenerative, metabolic-related, and immune diseases. Recent studies have shown that stress and pathological conditions regulate autophagy through exosomes and their cargos. Exosomes have been shown to regulate the intracellular autophagic process, which, in turn, affects the circulating exosomes. Exosomes interact with recipient cells primarily via three pathways: (1) phagocytosis, (2) ligand-receptor binding, and (3) membrane fusion.

This Special Issue aims to delineate apoptosis and autophagy as interconnected processes, even overlapping, aimed to signal pathways for final cell fate: the result of the interplay of different cell death programs.  Autophagy classically functions to maintain cell health during stressful conditions by targeting cytosolic components for degradation and recycling via lysosomal pathways. However, accumulating evidence also supports roles for autophagy-related genes (ATGs) in non- degradative processes including cellular secretion. Furthermore it is mandatory focus on the interplay between the endocytic pathway and the autophagic pathway, underlining the emerging connections between autophagy and Ev secretion.

In this Special Issue, original research articles and reviews are welcome. Research areas may include (but not limited to) the following:
1. Autophagy and Apoptosis as processes of Survival and cell death, oxidative stress and mitophagy, cellular self-digestion as adaptation to stress able to direct cargo secretion via certain extracellular vesicle (EV) subpopulations.
2. Furthermore the role of autophagy in regulation of cancer cell death/apoptosis during anti-cancer therapy and the different  steps during viral infection in which autophagy is involved

I look forward to receiving your contributions.

Dr. Barbara Canonico
Guest Editor

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Keywords

  • autophagy
  • apoptosis
  • survival and cell death
  • mitophagy
  • vesicular trafficking
  • cancer therapy
  • exocytosis
  • exosomes
  • viral infection

Published Papers (5 papers)

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Research

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13 pages, 1211 KiB  
Article
6-(Methylsulfonyl) Hexyl Isothiocyanate: A Chemopreventive Agent Inducing Autophagy in Leukemia Cell Lines
by Veronica Cocchi, Beatriz Jávega, Sofia Gasperini, José-Enrique O’Connor, Monia Lenzi and Patrizia Hrelia
Biomolecules 2022, 12(10), 1485; https://0-doi-org.brum.beds.ac.uk/10.3390/biom12101485 - 14 Oct 2022
Cited by 3 | Viewed by 1570
Abstract
Autophagy is a fundamental catabolic process of cellular survival. The role of autophagy in cancer is highly complex: in the early stages of neoplastic transformation, it can act as a tumor suppressor avoiding the accumulation of proteins, damaged organelles, and reactive oxygen species [...] Read more.
Autophagy is a fundamental catabolic process of cellular survival. The role of autophagy in cancer is highly complex: in the early stages of neoplastic transformation, it can act as a tumor suppressor avoiding the accumulation of proteins, damaged organelles, and reactive oxygen species (ROS), while during the advanced stages of cancer, autophagy is exploited by cancer cells to survive under starvation. 6-(Methylsulfonyl) hexyl isothiocyanate (6-MITC) is the most interesting compound in the Wasabia Japonica rizhome. Recently, we proved its ability to induce cytotoxic, cytostatic, and cell differentiation effects on leukemic cell lines and its antimutagenic activity on TK6 cells. In the current study, to further define its chemopreventive profile, Jurkat and HL-60 cells were treated with 6-MITC for 24 h. The modulation of the autophagic process and the involvement of ROS levels as a possible trigger mechanisms were analyzed by flow cytometry. We found that 6-MITC induced autophagy in Jurkat and HL-60 cells at the highest concentration tested and increased ROS intracellular levels in a dose-dependent manner. Our results implement available data to support 6-MITC as an attractive potential chemopreventive agent. Full article
(This article belongs to the Special Issue The Many Faces of Autophagy: Balancing Survival and Cell Death)
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7 pages, 1770 KiB  
Communication
Mutation of the Conserved Threonine 8 within the Human ARF Tumour Suppressor Protein Regulates Autophagy
by Rosa Fontana, Daniela Guidone, Tiziana Angrisano, Viola Calabrò, Alessandra Pollice, Girolama La Mantia and Maria Vivo
Biomolecules 2022, 12(1), 126; https://0-doi-org.brum.beds.ac.uk/10.3390/biom12010126 - 13 Jan 2022
Cited by 1 | Viewed by 1774
Abstract
Background: The ARF tumour suppressor plays a well-established role as a tumour suppressor, halting cell growth by both p53-dependent and independent pathways in several cellular stress response circuits. However, data collected in recent years challenged the traditional role of this protein as a [...] Read more.
Background: The ARF tumour suppressor plays a well-established role as a tumour suppressor, halting cell growth by both p53-dependent and independent pathways in several cellular stress response circuits. However, data collected in recent years challenged the traditional role of this protein as a tumour suppressor. Cancer cells expressing high ARF levels showed that its expression, far from being dispensable, is required to guarantee tumour cell survival. In particular, ARF can promote autophagy, a self-digestion pathway that helps cells cope with stressful growth conditions arising during both physiological and pathological processes. Methods: We previously showed that ARF is regulated through the activation of the protein kinase C (PKC)-dependent pathway and that an ARF phospho-mimetic mutant on the threonine residue 8, ARF-T8D, sustains cell proliferation in HeLa cells. We now explored the role of ARF phosphorylation in both basal and starvation-induced autophagy by analysing autophagic flux in cells transfected with either WT and ARF phosphorylation mutants by immunoblot and immunofluorescence. Results: Here, we show that endogenous ARF expression in HeLa cells is required for starvation-induced autophagy. Further, we provide evidence that the hyper-expression of ARF-T8D appears to inhibit autophagy in both HeLa and lung cancer cells H1299. This effect is due to the cells’ inability to elicit autophagosomes formation upon T8D expression. Conclusions: Our results lead to the hypothesis that ARF phosphorylation could be a mechanism through which the protein promotes or counteracts autophagy. Several observations underline how autophagy could serve a dual role in cancer progression, either protecting healthy cells from damage or aiding cancerous cells to survive. Our results indicate that ARF phosphorylation controls protein’s ability to promote or counteract autophagy, providing evidence of the dual role played by ARF in cancer progression. Full article
(This article belongs to the Special Issue The Many Faces of Autophagy: Balancing Survival and Cell Death)
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Review

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20 pages, 2134 KiB  
Review
Fatty Acids as Potent Modulators of Autophagy Activity in White Adipose Tissue
by Karolina Ciesielska and Małgorzata Gajewska
Biomolecules 2023, 13(2), 255; https://0-doi-org.brum.beds.ac.uk/10.3390/biom13020255 - 30 Jan 2023
Cited by 8 | Viewed by 2215
Abstract
A high-fat diet is one of the causative factors of obesity. The dietary profile of fatty acids is also an important variable in developing obesity, as saturated fatty acids are more obesogenic than monounsaturated and polyunsaturated fatty acids. Overweight and obesity are inseparably [...] Read more.
A high-fat diet is one of the causative factors of obesity. The dietary profile of fatty acids is also an important variable in developing obesity, as saturated fatty acids are more obesogenic than monounsaturated and polyunsaturated fatty acids. Overweight and obesity are inseparably connected with the excess of adipose tissue in the body, characterized by hypertrophy and hyperplasia of fat cells, which increases the risk of developing metabolic syndrome. Changes observed within hypertrophic adipocytes result in elevated oxidative stress, unfolded protein accumulation, and increased endoplasmic reticulum (ER) stress. One of the processes involved in preservation of cellular homeostasis is autophagy, which is defined as an intracellular lysosome-dependent degradation system that serves to recycle available macromolecules and eliminate damaged organelles. In obesity, activation of autophagy is increased and the process appears to be regulated by different types of dietary fatty acids. This review describes the role of autophagy in adipose tissue and summarizes the current understanding of the effects of saturated and unsaturated fatty acids in autophagy modulation in adipocytes. Full article
(This article belongs to the Special Issue The Many Faces of Autophagy: Balancing Survival and Cell Death)
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18 pages, 2671 KiB  
Review
The Role of Autophagy in Osteoarthritic Cartilage
by Wei-Chun Kao, Jian-Chih Chen, Ping-Cheng Liu, Cheng-Chang Lu, Sung-Yen Lin, Shu-Chun Chuang, Shun-Cheng Wu, Ling-hua Chang, Mon-Juan Lee, Chung-Da Yang, Tien-Ching Lee, Ying-Chun Wang, Jhong-You Li, Chun-Wang Wei and Chung-Hwan Chen
Biomolecules 2022, 12(10), 1357; https://0-doi-org.brum.beds.ac.uk/10.3390/biom12101357 - 23 Sep 2022
Cited by 16 | Viewed by 3303
Abstract
Osteoarthritis (OA) is one of the most common diseases leading to physical disability, with age being the main risk factor, and degeneration of articular cartilage is the main focus for the pathogenesis of OA. Autophagy is a crucial intracellular homeostasis system recycling flawed [...] Read more.
Osteoarthritis (OA) is one of the most common diseases leading to physical disability, with age being the main risk factor, and degeneration of articular cartilage is the main focus for the pathogenesis of OA. Autophagy is a crucial intracellular homeostasis system recycling flawed macromolecules and cellular organelles to sustain the metabolism of cells. Growing evidences have revealed that autophagy is chondroprotective by regulating apoptosis and repairing the function of damaged chondrocytes. Then, OA is related to autophagy depending on different stages and models. In this review, we discuss the character of autophagy in OA and the process of the autophagy pathway, which can be modulated by some drugs, key molecules and non-coding RNAs (microRNAs, long non-coding RNAs and circular RNAs). More in-depth investigations of autophagy are needed to find therapeutic targets or diagnostic biomarkers through in vitro and in vivo situations, making autophagy a more effective way for OA treatment in the future. The aim of this review is to introduce the concept of autophagy and make readers realize its impact on OA. The database we searched in is PubMed and we used the keywords listed below to find appropriate article resources. Full article
(This article belongs to the Special Issue The Many Faces of Autophagy: Balancing Survival and Cell Death)
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15 pages, 1411 KiB  
Review
Life and Death Decisions—The Many Faces of Autophagy in Cell Survival and Cell Death
by Ge Yu and Daniel J. Klionsky
Biomolecules 2022, 12(7), 866; https://0-doi-org.brum.beds.ac.uk/10.3390/biom12070866 - 21 Jun 2022
Cited by 17 | Viewed by 2485
Abstract
Autophagy is a process conserved from yeast to humans. Since the discovery of autophagy, its physiological role in cell survival and cell death has been intensively investigated. The inherent ability of the autophagy machinery to sequester, deliver, and degrade cytoplasmic components enables autophagy [...] Read more.
Autophagy is a process conserved from yeast to humans. Since the discovery of autophagy, its physiological role in cell survival and cell death has been intensively investigated. The inherent ability of the autophagy machinery to sequester, deliver, and degrade cytoplasmic components enables autophagy to participate in cell survival and cell death in multiple ways. The primary role of autophagy is to send cytoplasmic components to the vacuole or lysosomes for degradation. By fine-tuning autophagy, the cell regulates the removal and recycling of cytoplasmic components in response to various stress or signals. Recent research has shown the implications of the autophagy machinery in other pathways independent of lysosomal degradation, expanding the pro-survival role of autophagy. Autophagy also facilitates certain forms of regulated cell death. In addition, there is complex crosstalk between autophagy and regulated cell death pathways, with a number of genes shared between them, further suggesting a deeper connection between autophagy and cell death. Finally, the mitochondrion presents an example where the cell utilizes autophagy to strike a balance between cell survival and cell death. In this review, we consider the current knowledge on the physiological role of autophagy as well as its regulation and discuss the multiple functions of autophagy in cell survival and cell death. Full article
(This article belongs to the Special Issue The Many Faces of Autophagy: Balancing Survival and Cell Death)
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