Noncoding Landscapes of Uveal Melanoma

A special issue of Cancers (ISSN 2072-6694).

Deadline for manuscript submissions: closed (31 July 2021) | Viewed by 10262

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Guest Editor
Department of Biomedical and Biotechnological Sciences, Section of Biology and Genetics G. Sichel, University of Catania, via Santa Sofia 87, 95123 Catania, Italy
Interests: noncoding RNAs; expression analysis; cell biology; circulating RNAs; exosomes; uveal melanoma; colon cancer; glioblastoma
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Dear Colleagues,

For many decades, the main view of molecular functioning of the cells stated that proteins would represent the key regulators of the genomes and their dysfunctions would be the first cause of pathologies, including cancer. This protein-centered view was too simplistic to explain the tumor’s complexity. About 80% of our genome is dynamically and pervasively transcribed, mostly as non-protein-coding RNAs (ncRNAs). NcRNAs (e.g., miRNAs, lncRNAs, circRNAs) significantly contribute to the complex molecular signaling needed to regulate structures and functions in different cells and developmental contexts. Accordingly, their dysregulations participate to the onset and progression of many neoplastic phenotypes. The discovery of the central role of ncRNAs in the physiopathology of the cell has initiated a shift in the paradigms of cancer biology and has profoundly influenced our understanding of tumor genetics. Moreover, evidence has shown that ncRNAs can be secreted by cancer cells into biological fluids, spreading oncogenic signals to other cells. This would suggest that cancers may exploit RNA-based, hormone-like mechanisms to advantageously mold their extracellular environment. An impressive number of studies have shown the strong relationship between cancer and miRNA alterations; however, many other ncRNA species remain orphans of functions in most tumors. Moreover, ncRNA analyses have not yet deepened for less common cancers, including uveal melanoma. Although rare, uveal melanoma (UM) is the most common primary intraocular malignancy in adults, and about 50% of patients die from metastasis. Surprisingly, UM molecular bases are still to be fully explored, and the data reported on ncRNA role in UM onset and progression are actually scarce.

This Special Issue of Cancers will encompass new research articles and reviews on the involvement of cellular and extracellular ncRNAs in UM biology and/or their potential applications in diagnostics and therapy.

Prof. Dr. Marco Ragusa
Guest Editor

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Keywords

  • uveal melanoma
  • miRNAs
  • long noncoding RNAs
  • circRNAs
  • diagnosis
  • therapy

Published Papers (4 papers)

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Research

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23 pages, 3943 KiB  
Article
LncRNA LINC00518 Acts as an Oncogene in Uveal Melanoma by Regulating an RNA-Based Network
by Cristina Barbagallo, Rosario Caltabiano, Giuseppe Broggi, Andrea Russo, Lidia Puzzo, Teresio Avitabile, Antonio Longo, Michele Reibaldi, Davide Barbagallo, Cinzia Di Pietro, Michele Purrello and Marco Ragusa
Cancers 2020, 12(12), 3867; https://0-doi-org.brum.beds.ac.uk/10.3390/cancers12123867 - 21 Dec 2020
Cited by 33 | Viewed by 2706
Abstract
Uveal melanoma (UM) is the most common primary intraocular malignant tumor in adults; little is known about the contribution of non-coding RNAs (ncRNAs) to UM pathogenesis. Competitive endogenous RNA (ceRNA) networks based on RNA–RNA interactions regulate physiological and pathological processes. Through a combined [...] Read more.
Uveal melanoma (UM) is the most common primary intraocular malignant tumor in adults; little is known about the contribution of non-coding RNAs (ncRNAs) to UM pathogenesis. Competitive endogenous RNA (ceRNA) networks based on RNA–RNA interactions regulate physiological and pathological processes. Through a combined approach of in silico and experimental biology, we investigated the expression of a set of long non-coding RNAs (lncRNAs) in patient biopsies, identifying LINC00518 as a potential oncogene in UM. The detection of LINC00518 dysregulation associated with several in vitro functional assays allowed us to investigate its ceRNA regulatory network and shed light on its potential involvement in cancer-related processes, such as epithelial to mesenchymal transition (EMT) and CoCl2-induced hypoxia-like response. In vitro transient silencing of LINC00518 impaired cell proliferation and migration, and affected mRNA expression of LINGO2, NFIA, OTUD7B, SEC22C, and VAMP3. A “miRNA sponge” and “miRNA protector” model have been hypothesized for LINC00518-induced regulation of mRNAs. In vitro inhibition of MITF suggested its role as a potential activator of LINC00518 expression. Comprehensively, LINC00518 may be considered a new oncogene in UM and a potential target for RNA-based therapeutic approaches. Full article
(This article belongs to the Special Issue Noncoding Landscapes of Uveal Melanoma)
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Review

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21 pages, 1006 KiB  
Review
Do Extracellular RNAs Provide Insight into Uveal Melanoma Biology?
by Cristina Barbagallo, Chiara Bianca Maria Platania, Filippo Drago, Davide Barbagallo, Cinzia Di Pietro, Michele Purrello, Claudio Bucolo and Marco Ragusa
Cancers 2021, 13(23), 5919; https://0-doi-org.brum.beds.ac.uk/10.3390/cancers13235919 - 25 Nov 2021
Cited by 5 | Viewed by 1656
Abstract
Uveal melanoma (UM) is the most common primary intraocular malignant tumor in adults, showing a high mortality due to metastasis. Although it is considered a rare disease, a growing number of papers have reported altered levels of RNAs (i.e., coding and non-coding RNAs) [...] Read more.
Uveal melanoma (UM) is the most common primary intraocular malignant tumor in adults, showing a high mortality due to metastasis. Although it is considered a rare disease, a growing number of papers have reported altered levels of RNAs (i.e., coding and non-coding RNAs) in cancerous tissues and biological fluids from UM patients. The presence of circulating RNAs, whose dysregulation is associated with UM, paved the way to the possibility of exploiting it for diagnostic and prognostic purposes. However, the biological meaning and the origin of such RNAs in blood and ocular fluids of UM patients remain unexplored. In this review, we report the state of the art of circulating RNAs in UM and debate whether the amount and types of RNAs measured in bodily fluids mirror the RNA alterations from source cancer cells. Based on literature data, extracellular RNAs in UM patients do not represent, with rare exceptions, a snapshot of RNA dysregulations occurring in cancerous tissues, but rather the complex and heterogeneous outcome of a systemic dysfunction, including immune system activity, that modifies the mechanisms of RNA delivery from several cell types. Full article
(This article belongs to the Special Issue Noncoding Landscapes of Uveal Melanoma)
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19 pages, 1807 KiB  
Review
The Role of LncRNAs in Uveal Melanoma
by Paula Milán-Rois, Anan Quan, Frank J. Slack and Álvaro Somoza
Cancers 2021, 13(16), 4041; https://0-doi-org.brum.beds.ac.uk/10.3390/cancers13164041 - 11 Aug 2021
Cited by 7 | Viewed by 2986
Abstract
Uveal melanoma (UM) is an intraocular cancer tumor with high metastatic risk. It is considered a rare disease, but 90% of affected patients die within 15 years. Non-coding elements (ncRNAs) such as long non-coding RNAs (lncRNAs) have a crucial role in cellular homeostasis [...] Read more.
Uveal melanoma (UM) is an intraocular cancer tumor with high metastatic risk. It is considered a rare disease, but 90% of affected patients die within 15 years. Non-coding elements (ncRNAs) such as long non-coding RNAs (lncRNAs) have a crucial role in cellular homeostasis maintenance, taking part in many critical cellular pathways. Their deregulation, therefore, contributes to the induction of cancer and neurodegenerative and metabolic diseases. In cancer, lncRNAs are implicated in apoptosis evasion, proliferation, invasion, drug resistance, and other roles because they affect tumor suppressor genes and oncogenes. For these reasons, lncRNAs are promising targets in personalized medicine and can be used as biomarkers for diseases including UM. Full article
(This article belongs to the Special Issue Noncoding Landscapes of Uveal Melanoma)
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22 pages, 957 KiB  
Review
The Role of Non-Coding RNAs in Uveal Melanoma
by Manuel Bande, Daniel Fernandez-Diaz, Beatriz Fernandez-Marta, Cristina Rodriguez-Vidal, Nerea Lago-Baameiro, Paula Silva-Rodríguez, Laura Paniagua, María José Blanco-Teijeiro, María Pardo and Antonio Piñeiro
Cancers 2020, 12(10), 2944; https://0-doi-org.brum.beds.ac.uk/10.3390/cancers12102944 - 12 Oct 2020
Cited by 14 | Viewed by 2250
Abstract
Uveal melanoma (UM) is the most common primary intraocular tumor in adulthood. Approximately 50% of patients develop metastatic disease, which typically affects the liver and is usually fatal within one year. This type of cancer is heterogeneous in nature and is divided into [...] Read more.
Uveal melanoma (UM) is the most common primary intraocular tumor in adulthood. Approximately 50% of patients develop metastatic disease, which typically affects the liver and is usually fatal within one year. This type of cancer is heterogeneous in nature and is divided into two broad groups of tumors according to their susceptibility to develop metastasis. In the last decade, chromosomal abnormalities and the aberrant expression of several signaling pathways and oncogenes in uveal melanomas have been described. Recently, importance has been given to the association of the mentioned deregulation with the expression of non-coding RNAs (ncRNAs). Here, we review the different classes of ncRNAs—such as long non-coding RNAs (lncRNAs) and microRNAs (miRNAs)—and their contribution to the development of UM. Special attention is given to miRNAs and their regulatory role in physiopathology and their potential as biomarkers. As important agents in gene regulation, ncRNAs have a huge potential for opening up therapeutic pathways, predicting response to treatment, and anticipating patient outcome for UM. Full article
(This article belongs to the Special Issue Noncoding Landscapes of Uveal Melanoma)
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