Genetics and Genomics of Psychrophilic and Psychrotolerant Microorganisms

A special issue of Genes (ISSN 2073-4425). This special issue belongs to the section "Microbial Genetics and Genomics".

Deadline for manuscript submissions: closed (20 May 2021) | Viewed by 3681

Special Issue Editors


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Guest Editor
Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland
Interests: genomics; metagenomics; mobile genetic elements; environmental microbiology; environmental biotechnology; Arctic, Antarctica, metal metabolism, antibiotic resistance, extremophiles

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Guest Editor
Department of Biology, Queen’s University, 116 Barrie Street, Kingston, ON K7L 3N6, Canada
Interests: functional genomics; plant–microbe interactions; bacterial genome organization; metabolism; antimicrobial resistance; symbiotic nitrogen fixation; gene networks

Special Issue Information

Dear Colleagues,

Permanently cold environments cover around 75% of the Earth’s surface, including the Arctic and Antarctic regions as well as most oceans and high mountains. While such habitats are challenging to most life forms, they are inhabited by various microorganisms, especially bacteria and archaea, most of which are uniquely adapted to growth at low temperatures. These microorganisms can be classified into two groups based on their temperature tolerance: (i) psychrophiles, which can grow at temperatures not exceeding ~20 °C, and (ii) psychrotolerants, which tolerate temperatures between 0 and ~30 °C. The diversity and biology of psychrophiles and psychrotolerants have been extensively studied in recent years, and numerous strains have been subjected to genomic investigations. However, there are still considerable gaps in our knowledge of this ecological group.

This Special Issue of Genes aims to present the results of genetic and genomic analyses of cold-active bacteria and archaea as well as works utilizing transcriptomic, proteomic, or metabolomic analyses. We are especially interested in investigations of various mechanisms enabling the adaptation of cold-active microorganisms to extreme temperature conditions, i.e., permanent cold, as well as other stressors like nutrient deficiency, presence of toxicants, and high salinity. Comparative genomics works providing considerable new knowledge about the diversity of specific taxa of cold-active microorganisms will also be included. Since rapid adaptation of prokaryotic cells to changing environmental conditions may be necessary for survival in permanently cold environments, and the main drivers of such “short-term evolution” are various mobile genetic elements (MGEs), manuscripts describing them and overall horizontal gene transfer in cold regions are also welcome; this includes papers detailing novel host–virus systems. Finally, as cold-active microorganisms are highly desired from a biotechnological point of view, papers describing applications of psychrotolerants or psychrophiles as microbial cell factories, their usage in environmental biotechnologies and industry, as well as the development of novel tools for genetic manipulations in this group of microorganisms are also of interest.

Dr. Lukasz Dziewit
Dr. George C. diCenzo
Guest Editors

Manuscript Submission Information

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Keywords

  • biotechnology
  • cold adaptation
  • genetic manipulations
  • genomics
  • host-virus system
  • mobile genetic elements
  • phage
  • plasmid
  • psychrophile
  • psychrotolerant
  • stress response
  • microbiology

Published Papers (1 paper)

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Research

18 pages, 2932 KiB  
Article
Biodiversity and Habitats of Polar Region Polyhydroxyalkanoic Acid-Producing Bacteria: Bioprospection by Popular Screening Methods
by Małgorzata Marta Rogala, Jan Gawor, Robert Gromadka, Magdalena Kowalczyk and Jakub Grzesiak
Genes 2020, 11(8), 873; https://0-doi-org.brum.beds.ac.uk/10.3390/genes11080873 - 31 Jul 2020
Cited by 11 | Viewed by 3200
Abstract
Polyhydroxyalkanoates (PHAs), the intracellular polymers produced by various microorganisms as carbon and energy storage, are of great technological potential as biodegradable versions of common plastics. PHA-producing microbes are therefore in great demand and a plethora of different environments, especially extreme habitats, have been [...] Read more.
Polyhydroxyalkanoates (PHAs), the intracellular polymers produced by various microorganisms as carbon and energy storage, are of great technological potential as biodegradable versions of common plastics. PHA-producing microbes are therefore in great demand and a plethora of different environments, especially extreme habitats, have been probed for the presence of PHA-accumulators. However, the polar region has been neglected in this regard, probably due to the low accessibility of the sampling material and unusual cultivation regime. Here, we present the results of a screening procedure involving 200 bacterial strains isolated from 25 habitats of both polar regions. Agar-based tests, microscopy, and genetic methods were conducted to elucidate the biodiversity and potential of polar-region PHA-accumulators. Microscopic observation of Nile Red stained cells proved to be the most reliable screening method as it allowed to confirm the characteristic bright orange glow of the Nile Red–PHA complex as well as the typical morphology of the PHA inclusions. Psychrophilic PHA-producers belonged mostly to the Comamonadaceae family (Betaproteobacteria) although actinobacterial PHA synthesizers of the families, Microbacteriaceae and Micrococcaceae also featured prominently. Glacial and postglacial habitats as well as developed polar region soils, were evaluated as promising for PHA-producer bioprospection. This study highlights the importance of psychrophiles as biodiverse and potent polyhydroxyalkanoate sources for scientific and application-aimed research. Full article
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