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Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Biochemistry".

Deadline for manuscript submissions: closed (29 February 2020) | Viewed by 56813

Special Issue Editor


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Guest Editor
Institute of Bioscience and Bioresources (IBBR), National Research Council, Via Pietro Castellino 111, 80131 Napoli, Italy
Interests: protein biochemistry; recombinant protein; heterologous expression; carbonic anhydrase; enzyme and protein purification; enzyme characterization; enzyme thermostability; cold-adapted enzymes
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Special Issue Information

Dear Colleagues,

The superfamily of carbonic anhydrases (CAs, EC 4.2.1.1) represents a group of ubiquitous proteins, which catalyze the physiologically important hydration–dehydration reaction of carbon dioxide to bicarbonate and protons: CO2 + H2O ⇄ HCO3- + H+. Their crucial role is to equilibrate the reaction between three essential chemical species: CO2, bicarbonate (HCO3), and protons (H+). These chemical species are metabolites distributed throughout the fluids of all living organisms and are involved in a large number of physiologic and biosynthetic processes, such as respiration, photosynthesis, gluconeogenesis, lipogenesis, ureagenesis, carboxylation, and biochemical pathways involving pH homeostasis. Furthermore, processes such as secretion of electrolytes, calcification, bone resorption, transport of CO2 and bicarbonate are assisted by these enzymes. Up to date, the CA superfamily contains seven genetically distinct families (or classes), named α-, β-, γ-, δ-, ζ-, η-, and ɵ-CAs. The α-CAs were discovered in vertebrates, eubacteria, algae, and in the cytoplasm of green plants; the β-CAs were identified in eubacteria, algae, and in the chloroplasts of both mono- and dicotyledons; the γ-CAs were found mainly in Archaea and some eubacteria; the δ- and ζ-CAs are typical of the marine diatoms. The η- and q-CAs were recently discovered. The η-CA was recognized in the genome of the protozoa Plasmodia falciparum, while the q-CA was identified in the lumen of the pyrenoid-penetrating thylakoid of the unicellular alga Phaeodactylum tricornutum. From a phylogenetic viewpoint, the seven classes are an example of convergent evolution, since all classes show low sequence similarity and different folds and structures, while having a common CO2 hydratase activity, with the catalytically active species represented by a metal hydroxide derivative. These enzymes are also characterized by the presence of a large number of isoforms in most organisms investigated so far.

Drugs interfering with CAs activity have been clinically used for more than 70 years, most of them belonging to the sulfonamide class. Many CA inhibitors (CAI) exist, which could be classified as: inhibitors binding the metal ion (anion, sulfonamides and their bioisosteres, dithiocarbamates, xanthates); inhibitors anchoring to the water molecule/hydroxide ion coordinated to the metal (phenols, polyamines, thioxocoumarins, sulfocumarins); inhibitors occluding the active site entrance (coumarins and their isosteres); inhibitors binding outside of the active site. Inhibition of CAs has many pharmacologic applications, such as against glaucoma, convulsions, obesity, and in the therapy and diagnosis of cancer.  An emerging area is studying CAI as anti-infectives, i.e., as antifungal, antibacterial, and antiprotozoan agents with a novel mechanism of action, since it has been seen that the inhibition of pathogens’ CAs leads to growth impairment or growth defects in the host microorganisms.

The CA superfamily can bind molecules known as “activators” (CAA) through the middle-exit part of the active site. CAA are biogenic amines (histamine, serotonin, and catecholamines), amino acids, oligopeptides, or small proteins. CAAs enhance the catalytic constant (kcat) of the enzyme, with no effect on the KM. CAAs may have pharmacologic applications in the therapy of memory-related disorders, neurodegenerative diseases (Alzheimer’s disease), and genetic CA-deficiency syndromes.

Moreover, since most bacteria are incredibly abundant in environments that are hostile to all other forms of life, CAs from extremophiles are exciting candidates for industrial and medical applications, such as the post-combustion carbon-capture process and the realization of artificial lungs and biosensors. The ancient CAs can be considered as a biotechnological multitasking superfamily because the various CA classes are potentially able to both fight the increase of CO2 in the atmosphere produced by anthropogenic activities and ameliorate human health because of their biomedical applications.

This Special Issue is dedicated to all the important advances in the field of carbonic anhydrases, their inhibitors and activators, and their potential use in medical and biotechnological applications, since the CA superfamily represents a very promising target for the scientific community for its ubiquity and crucial role in many physiologic and pathologic processes.

Original papers, reviews articles, and perspectives from experts in the field are welcome.

Prof. Dr. Clemente Capasso
Guest Editor

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Keywords

  • metalloenzymes
  • bacteria
  • pathogens
  • sulfonamides
  • inhibitors
  • activators
  • antiinfective agents
  • medicine
  • anticancer
  • neurodegenerative diseases
  • biomedical applications
  • biotechnology
  • carbon capture

Published Papers (15 papers)

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Editorial

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4 pages, 205 KiB  
Editorial
Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes
by Clemente Capasso
Int. J. Mol. Sci. 2023, 24(8), 7014; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms24087014 - 10 Apr 2023
Cited by 1 | Viewed by 1210
Abstract
Numerous physiological and pathological cellular processes depend on the ability  [...] Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)

Research

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10 pages, 1496 KiB  
Article
Carbonic Anhydrase VI in Skin Wound Healing Study on Car6 Knockout Mice
by Toini Pemmari, Jaakko Laakso, Maarit S. Patrikainen, Seppo Parkkila and Tero A. H. Järvinen
Int. J. Mol. Sci. 2020, 21(14), 5092; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms21145092 - 18 Jul 2020
Cited by 3 | Viewed by 2605
Abstract
Carbonic anhydrases (CAs) contribute to tumor cell migration by generating an acidic environment through the conversion of carbon dioxide to bicarbonate and a proton. CA VI is secreted to milk and saliva, and it could contribute to wound closure, as a potential trophic [...] Read more.
Carbonic anhydrases (CAs) contribute to tumor cell migration by generating an acidic environment through the conversion of carbon dioxide to bicarbonate and a proton. CA VI is secreted to milk and saliva, and it could contribute to wound closure, as a potential trophic factor, in animals that typically lick their wounds. Our aim was to investigate whether human CA VI improves skin-wound healing in full-thickness skin-wound models. The effect was studied in Car6 / knockout mice and wild type littermates. Half of both mice strains were given topically administered, milk-derived CA VI after wounding and eight hours later. The amount of topically given CA VI exceeded the predicted amount of natural saliva-delivered CA VI. The healing was followed for seven days and studied from photographs and histological sections. Our results showed no significant differences between the treatment groups in wound closure, re-epithelization, or granulation tissue formation, nor did the Car6 genotype affect the healing. Our results demonstrate that CA VI does not play a major role in skin-wound healing and also suggest that saliva-derived CA VI is not responsible for the licking-associated improved wound healing in animals. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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12 pages, 3434 KiB  
Article
Novel Indole-Based Hydrazones as Potent Inhibitors of the α-class Carbonic Anhydrase from Pathogenic Bacterium Vibrio cholerae
by Kübra Demir-Yazıcı, Özlen Güzel-Akdemir, Andrea Angeli, Claudiu T. Supuran and Atilla Akdemir
Int. J. Mol. Sci. 2020, 21(9), 3131; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms21093131 - 29 Apr 2020
Cited by 4 | Viewed by 2402
Abstract
Due to the increasing resistance of currently used antimicrobial drugs, there is an urgent problem for the treatment of cholera disease, selective inhibition of the α-class carbonic anhydrases (CA, EC 4.2.1.1) from the pathogenic bacterium Vibrio cholerae (VcCA) presents an alternative therapeutic target. [...] Read more.
Due to the increasing resistance of currently used antimicrobial drugs, there is an urgent problem for the treatment of cholera disease, selective inhibition of the α-class carbonic anhydrases (CA, EC 4.2.1.1) from the pathogenic bacterium Vibrio cholerae (VcCA) presents an alternative therapeutic target. In this study, a series of hydrazone derivatives, carrying the 2-(hydrazinocarbonyl)-3-phenyl-1H-indole-5-sulfonamide scaffold, have been evaluated as inhibitors of the VcCA with molecular modeling studies. The results suggest that these compounds may bind to the active site of VcCA. To verify this, VcCA enzyme inhibition studies were performed and as predicted most of the tested compounds displayed potent inhibitory activities against VcCA with three compounds showing KI values lower than 30 nM. In addition, all these compounds showed selectivity for VcCA and the off-targets hCA I and II. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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17 pages, 4258 KiB  
Article
Development of Thiazolidinones as Fungal Carbonic Anhydrase Inhibitors
by Özlen Güzel-Akdemir, Simone Carradori, Rossella Grande, Kübra Demir-Yazıcı, Andrea Angeli, Claudiu T. Supuran and Atilla Akdemir
Int. J. Mol. Sci. 2020, 21(8), 2960; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms21082960 - 22 Apr 2020
Cited by 17 | Viewed by 2785
Abstract
In our efforts to find new and selective thiazolidinone-based anti-Candida agents, we synthesized and tested 26 thiazolidinones against several Candida spp. and Gram-positive and Gram-negative bacteria. The compounds showed selective antifungal activity with potency similar to fluconazole and clotrimazole, while lacking strong [...] Read more.
In our efforts to find new and selective thiazolidinone-based anti-Candida agents, we synthesized and tested 26 thiazolidinones against several Candida spp. and Gram-positive and Gram-negative bacteria. The compounds showed selective antifungal activity with potency similar to fluconazole and clotrimazole, while lacking strong antibacterial activity. Molecular docking and molecular dynamics studies were performed on Candida CYP51a1 and carbonic anhydrase (CA) enzymes to further suggest putative targets that could mediate the antifungal effects of these compounds. Finally, the compounds were tested in enzyme inhibition assays to assess their putative mechanism of action and showed promising KI values in the 0.1–10 µM range against the Candida glabrata β-CA enzyme CgNce103. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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12 pages, 2054 KiB  
Article
Biocatalytic CO2 Absorption and Structural Studies of Carbonic Anhydrase under Industrially-Relevant Conditions
by Aline M. de Castro, Elisabete Ferreira, Carla Portugal, Luisa A. Neves and João G. Crespo
Int. J. Mol. Sci. 2020, 21(8), 2918; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms21082918 - 22 Apr 2020
Cited by 12 | Viewed by 2975
Abstract
The unprecedently high CO2 levels in the atmosphere evoke the urgent need for development of technologies for mitigation of its emissions. Among the alternatives, the biocatalytic route has been claimed as one of the most promising. In the present work, the carbonic [...] Read more.
The unprecedently high CO2 levels in the atmosphere evoke the urgent need for development of technologies for mitigation of its emissions. Among the alternatives, the biocatalytic route has been claimed as one of the most promising. In the present work, the carbonic anhydrase from bovine erythrocytes (BCA) was employed as a model enzyme for structural studies in an aqueous phase at alkaline pH, which is typical of large-scale absorption processes under operation. Circular dichroism (CD) analysis revealed a high enzymatic stability at pH 10 with a prominent decrease of the melting temperature above this value. The CO2 absorption capacity of the aqueous solutions were assessed by online monitoring of pressure decay in a stainless-steel cell, which indicated a better performance at pH 10 with a kinetic rate increase of up to 43%, as compared to non-biocatalytic conditions. Even low enzyme concentrations (0.2 mg g−1) proved to be sufficient to improve the overall CO2 capture process performance. The enzyme-enhanced approach of CO2 capture presents a high potential and should be further studied. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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15 pages, 2027 KiB  
Article
Benzylaminoethyureido-Tailed Benzenesulfonamides: Design, Synthesis, Kinetic and X-ray Investigations on Human Carbonic Anhydrases
by Majid Ali, Murat Bozdag, Umar Farooq, Andrea Angeli, Fabrizio Carta, Paola Berto, Giuseppe Zanotti and Claudiu T. Supuran
Int. J. Mol. Sci. 2020, 21(7), 2560; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms21072560 - 07 Apr 2020
Cited by 17 | Viewed by 2988
Abstract
A drug design strategy of carbonic anhydrase inhibitors (CAIs) belonging to sulfonamides incorporating ureidoethylaminobenzyl tails is presented. A variety of substitution patterns on the ring and the tails, located on para- or meta- positions with respect to the sulfonamide warheads were [...] Read more.
A drug design strategy of carbonic anhydrase inhibitors (CAIs) belonging to sulfonamides incorporating ureidoethylaminobenzyl tails is presented. A variety of substitution patterns on the ring and the tails, located on para- or meta- positions with respect to the sulfonamide warheads were incorporated in the new compounds. Inhibition of human carbonic anhydrases (hCA) isoforms I, II, IX and XII, involving various pathologies, was assessed with the new compounds. Selective inhibitory profile towards hCA II was observed, the most active compounds being low nM inhibitors (KIs of 2.8–9.2 nM, respectively). Extensive X-ray crystallographic analysis of several sulfonamides in an adduct with hCA I allowed an in-depth understanding of their binding mode and to lay a detailed structure-activity relationship. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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7 pages, 943 KiB  
Communication
Overexpression of CA1 mRNA and the CA I Protein in Tumor Cells Does Not Change the Gene Expression of the ECM Proteins
by Ján Lakota and Mária Dubrovčáková
Int. J. Mol. Sci. 2020, 21(2), 639; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms21020639 - 18 Jan 2020
Cited by 1 | Viewed by 2640
Abstract
In our study, we performed retroviral transduction to overexpress codon-optimized variant of gene encoding human carbonic anhydrase I (optiCA1) in two tumor cell lines PC3 and MDA-MB-231, derived from human prostatic and breast carcinoma respectively. We achieved significantly enhanced and stable overexpression of [...] Read more.
In our study, we performed retroviral transduction to overexpress codon-optimized variant of gene encoding human carbonic anhydrase I (optiCA1) in two tumor cell lines PC3 and MDA-MB-231, derived from human prostatic and breast carcinoma respectively. We achieved significantly enhanced and stable overexpression of exogenous optiCA1 gene. The expression of endogenous, wild CA1 gene was found to be normally low (Ct 28.6 for PC3 cells) or below to the detection limit (Ct 35.5 for MDA-MB-231 cells). No morphological changes and no decreasing viability of tumor cells were observed upon stable overexpression of the optiCA1 gene. In our study we have shown that the overexpression of the optimized human CA1 in engineered PC3 and MDA-MB-231 cells did not induce similar changes as we observed in tumor cells cultivated in the presence of human sera containing extensively high titers of anti-CA I autoantibodies from patients with complete remission of malignant disease. In both optiCA1transduced cell lines, the expression of selected genes responsible for basal lamina assembly, cytoskeleton, extracellular matrix proteins and proto-oncogenes (COL1A1, COL4A4, LAMC2, CTHRC1, and WNT7B) was not changed. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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16 pages, 2025 KiB  
Article
Novel Diamide-Based Benzenesulfonamides as Selective Carbonic Anhydrase IX Inhibitors Endowed with Antitumor Activity: Synthesis, Biological Evaluation and In Silico Insights
by Mohamed A. Abdelrahman, Wagdy M. Eldehna, Alessio Nocentini, Silvia Bua, Sara T. Al-Rashood, Ghada S. Hassan, Alessandro Bonardi, Abdulrahman A. Almehizia, Hamad M. Alkahtani, Amal Alharbi, Paola Gratteri and Claudiu T. Supuran
Int. J. Mol. Sci. 2019, 20(10), 2484; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms20102484 - 20 May 2019
Cited by 22 | Viewed by 3663
Abstract
In this work, we present the synthesis and biological evaluation of novel series of diamide-based benzenesulfonamides 5a–h as inhibitors of the metalloenzyme carbonic anhydrase (CA, EC 4.2.1.1) isoforms hCA I, II, IX and XII. The target tumor-associated isoforms hCA IX and XII were [...] Read more.
In this work, we present the synthesis and biological evaluation of novel series of diamide-based benzenesulfonamides 5a–h as inhibitors of the metalloenzyme carbonic anhydrase (CA, EC 4.2.1.1) isoforms hCA I, II, IX and XII. The target tumor-associated isoforms hCA IX and XII were undeniably the most affected ones (KIs: 8.3–123.3 and 9.8–134.5 nM, respectively). Notably, diamides 5a and 5h stood out as a single-digit nanomolar hCA IX inhibitors (KIs = 8.8 and 8.3 nM). The SAR outcomes highlighted that bioisosteric replacement of the benzylidene moiety, compounds 5a–g, with the hetero 2-furylidene moiety, compound 5h, achieved the best IX/I and IX/II selectivity herein reported with SIs of 985 and 13.8, respectively. Molecular docking simulations of the prepared diamides within CA IX active site revealed the ability of 5h to establish an additional H-bond between the heterocyclic oxygen and HE/Gln67. Moreover, benzenesulfonamides 5a, 5b and 5h were evaluated for their antitumor activity against renal cancer UO-31 cell line. Compound 5h was the most potent derivative with about 1.5-fold more enhanced activity (IC50 = 4.89 ± 0.22 μM) than the reference drug Staurosporine (IC50 = 7.25 ± 0.43 μM). Moreover, 5a and 5h were able to induce apoptosis in UO-31 cells as evidenced by the significant increase in the percent of annexinV-FITC positive apoptotic cells by 22.5- and 26.5-folds, respectively. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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12 pages, 1442 KiB  
Article
Cloning, Purification, and Characterization of a β-Carbonic Anhydrase from Malassezia restricta, an Opportunistic Pathogen Involved in Dandruff and Seborrheic Dermatitis
by Sonia Del Prete, Daniela Vullo, Cynthia Ghobril, Julien Hitce, Cécile Clavaud, Xavier Marat, Clemente Capasso and Claudiu T. Supuran
Int. J. Mol. Sci. 2019, 20(10), 2447; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms20102447 - 17 May 2019
Cited by 23 | Viewed by 5491
Abstract
The cloning, purification, and initial characterization of the β-carbonic anhydrase (CA, EC 4.2.1.1) from the genome of the opportunistic pathogen Malassezia restricta (MreCA), which a fungus involved in dandruff and seborrheic dermatitis (SD), is reported. MreCA is a protein consisting of 230 amino [...] Read more.
The cloning, purification, and initial characterization of the β-carbonic anhydrase (CA, EC 4.2.1.1) from the genome of the opportunistic pathogen Malassezia restricta (MreCA), which a fungus involved in dandruff and seborrheic dermatitis (SD), is reported. MreCA is a protein consisting of 230 amino acid residues and shows high catalytic activity for the hydration of CO2 into bicarbonate and protons, with the following kinetic parameters: kcat of 1.06 × 106 s−1 and kcat/KM of 1.07 × 108 M−1 s−1. It is also sensitive to inhibition by the sulfonamide acetazolamide (KI of 50.7 nM). Phylogenetically, MreCA and other CAs from various Malassezia species seem to be on a different branch, distinct from that of other β-CAs found in fungi, such as Candida spp., Saccharomyces cerevisiae, Aspergillus fumigatus, and Sordaria macrospora, with only Cryptococcus neoformans and Ustilago maydis enzymes clustering near MreCA. The further characterization of this enzyme and the identification of inhibitors that may interfere with its life cycle might constitute new strategies for fighting dandruff and SD. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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15 pages, 2665 KiB  
Article
Pain Relieving Effect of-NSAIDs-CAIs Hybrid Molecules: Systemic and Intra-Articular Treatments against Rheumatoid Arthritis
by Laura Micheli, Murat Bozdag, Ozlem Akgul, Fabrizio Carta, Clizia Guccione, Maria Camilla Bergonzi, Anna Rita Bilia, Lorenzo Cinci, Elena Lucarini, Carmen Parisio, Claudiu T. Supuran, Carla Ghelardini and Lorenzo Di Cesare Mannelli
Int. J. Mol. Sci. 2019, 20(8), 1923; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms20081923 - 18 Apr 2019
Cited by 24 | Viewed by 3989
Abstract
To study new target-oriented molecules that are active against rheumatoid arthritis-dependent pain, new dual inhibitors incorporating both a carbonic anhydrase (CA)-binding moiety and a cyclooxygenase inhibitor (NSAID) were tested in a rat model of rheumatoid arthritis induced by CFA intra-articular (i.a.) injection. A [...] Read more.
To study new target-oriented molecules that are active against rheumatoid arthritis-dependent pain, new dual inhibitors incorporating both a carbonic anhydrase (CA)-binding moiety and a cyclooxygenase inhibitor (NSAID) were tested in a rat model of rheumatoid arthritis induced by CFA intra-articular (i.a.) injection. A comparison between a repeated per os treatment and a single i.a. injection was performed. CFA (50 µL) was injected in the tibiotarsal joint, and the effect of per os repeated treatment (1 mg kg−1) or single i.a injection (1 mg mL−1, 50 µL) with NSAIDs-CAIs hybrid molecules, named 4 and 5, was evaluated. The molecules 4 and 5, which were administered daily for 14 days, significantly prevented CFA-induced hypersensitivity to mechanical noxious (Paw pressure test) and non-noxious stimuli (von Frey test), the postural unbalance related to spontaneous pain (Incapacitance test) and motor alterations (Beam balance test). Moreover, to study a possible localized activity, 4 and 5 were formulated in liposomes (lipo 4 and lipo 5, both 1 mg mL−1) and directly administered by a single i.a. injection seven days after CFA injection. Lipo 5 decreased the mechanical hypersensitivity to noxious and non-noxious stimuli and improved motor coordination. Oral and i.a. treatments did not rescue the joint, as shown by the histological analysis. This new class of potent molecules, which is able to inhibit at the same time CA and cyclooxygenase, shows high activity in a preclinical condition of rheumatoid arthritis, strongly suggesting a novel attractive pharmacodynamic profile. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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Review

Jump to: Editorial, Research

15 pages, 1648 KiB  
Review
Insights on the Functions and Ecophysiological Relevance of the Diverse Carbonic Anhydrases in Microalgae
by Erik L. Jensen, Stephen C. Maberly and Brigitte Gontero
Int. J. Mol. Sci. 2020, 21(8), 2922; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms21082922 - 22 Apr 2020
Cited by 41 | Viewed by 4941
Abstract
Carbonic anhydrases (CAs) exist in all kingdoms of life. They are metalloenzymes, often containing zinc, that catalyze the interconversion of bicarbonate and carbon dioxide—a ubiquitous reaction involved in a variety of cellular processes. So far, eight classes of apparently evolutionary unrelated CAs that [...] Read more.
Carbonic anhydrases (CAs) exist in all kingdoms of life. They are metalloenzymes, often containing zinc, that catalyze the interconversion of bicarbonate and carbon dioxide—a ubiquitous reaction involved in a variety of cellular processes. So far, eight classes of apparently evolutionary unrelated CAs that are present in a large diversity of living organisms have been described. In this review, we focus on the diversity of CAs and their roles in photosynthetic microalgae. We describe their essential role in carbon dioxide-concentrating mechanisms and photosynthesis, their regulation, as well as their less studied roles in non-photosynthetic processes. We also discuss the presence in some microalgae, especially diatoms, of cambialistic CAs (i.e., CAs that can replace Zn by Co, Cd, or Fe) and, more recently, a CA that uses Mn as a metal cofactor, with potential ecological relevance in aquatic environments where trace metal concentrations are low. There has been a recent explosion of knowledge about this well-known enzyme with exciting future opportunities to answer outstanding questions using a range of different approaches. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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14 pages, 9518 KiB  
Review
Multivalent Carbonic Anhydrases Inhibitors
by Fabrizio Carta, Pascal Dumy, Claudiu T. Supuran and Jean-Yves Winum
Int. J. Mol. Sci. 2019, 20(21), 5352; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms20215352 - 28 Oct 2019
Cited by 21 | Viewed by 3496
Abstract
Biomolecular recognition using a multivalent strategy has been successfully applied, this last decade on several biological targets, especially carbohydrate-processing enzymes, proteases, and phosphorylases. This strategy is based on the fact that multivalent interactions of several inhibitory binding units grafted on a presentation platform [...] Read more.
Biomolecular recognition using a multivalent strategy has been successfully applied, this last decade on several biological targets, especially carbohydrate-processing enzymes, proteases, and phosphorylases. This strategy is based on the fact that multivalent interactions of several inhibitory binding units grafted on a presentation platform may enhance the binding affinity and selectivity. The zinc metalloenzymes carbonic anhydrases (CAs, EC 4.2.1.1) are considered as drug targets for several pathologies, and different inhibitors found clinical applications as diuretics, antiglaucoma agents, anticonvulsants, and anticancer agents/diagnostic tools. Their main drawback is related to the lack of isoform selectivity leading to serious side effects for all pathologies in which they are employed. Thus, the multivalent approach may open new opportunities in the drug design of innovative isoform-selective carbonic anhydrase inhibitors with biomedical applications. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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16 pages, 5462 KiB  
Review
Mycobacterium tuberculosis β-Carbonic Anhydrases: Novel Targets for Developing Antituberculosis Drugs
by Ashok Aspatwar, Visvaldas Kairys, Sangeetha Rala, Mataleena Parikka, Murat Bozdag, Fabrizio Carta, Claudiu T. Supuran and Seppo Parkkila
Int. J. Mol. Sci. 2019, 20(20), 5153; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms20205153 - 17 Oct 2019
Cited by 28 | Viewed by 3654
Abstract
The genome of Mycobacterium tuberculosis (Mtb) encodes three β-carbonic anhydrases (CAs, EC 4.2.1.1) that are crucial for the life cycle of the bacterium. The Mtb β-CAs have been cloned and characterized, and the catalytic activities of the enzymes have [...] Read more.
The genome of Mycobacterium tuberculosis (Mtb) encodes three β-carbonic anhydrases (CAs, EC 4.2.1.1) that are crucial for the life cycle of the bacterium. The Mtb β-CAs have been cloned and characterized, and the catalytic activities of the enzymes have been studied. The crystal structures of two of the enzymes have been resolved. In vitro inhibition studies have been conducted using different classes of carbonic anhydrase inhibitors (CAIs). In vivo inhibition studies of pathogenic bacteria containing β-CAs showed that β-CA inhibitors effectively inhibited the growth of pathogenic bacteria. The in vitro and in vivo studies clearly demonstrated that β-CAs of not only mycobacterial species, but also other pathogenic bacteria, can be targeted for developing novel antimycobacterial agents for treating tuberculosis and other microbial infections that are resistant to existing drugs. In this review, we present the molecular and structural data on three β-CAs of Mtb that will give us better insights into the roles of these enzymes in pathogenic bacterial species. We also present data from both in vitro inhibition studies using different classes of chemical compounds and in vivo inhibition studies focusing on M. marinum, a model organism and close relative of Mtb. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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17 pages, 715 KiB  
Review
A New Kid on the Block? Carbonic Anhydrases as Possible New Targets in Alzheimer’s Disease
by Gustavo Provensi, Fabrizio Carta, Alessio Nocentini, Claudiu T. Supuran, Fiorella Casamenti, M. Beatrice Passani and Silvia Fossati
Int. J. Mol. Sci. 2019, 20(19), 4724; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms20194724 - 24 Sep 2019
Cited by 59 | Viewed by 7296
Abstract
The increase in the incidence of neurodegenerative diseases, in particular Alzheimer’s Disease (AD), is a consequence of the world′s population aging but unfortunately, existing treatments are only effective at delaying some of the symptoms and for a limited time. Despite huge efforts by [...] Read more.
The increase in the incidence of neurodegenerative diseases, in particular Alzheimer’s Disease (AD), is a consequence of the world′s population aging but unfortunately, existing treatments are only effective at delaying some of the symptoms and for a limited time. Despite huge efforts by both academic researchers and pharmaceutical companies, no disease-modifying drugs have been brought to the market in the last decades. Recently, several studies shed light on Carbonic Anhydrases (CAs, EC 4.2.1.1) as possible new targets for AD treatment. In the present review we summarized preclinical and clinical findings regarding the role of CAs and their inhibitors/activators on cognition, aging and neurodegeneration and we discuss future challenges and opportunities in the field. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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22 pages, 1085 KiB  
Review
Phytochemicals as Modulators of Long Non-Coding RNAs and Inhibitors of Cancer-Related Carbonic Anhydrases
by Tayebeh Saghafi, Ramezan Ali Taheri, Seppo Parkkila and Reza Zolfaghari Emameh
Int. J. Mol. Sci. 2019, 20(12), 2939; https://0-doi-org.brum.beds.ac.uk/10.3390/ijms20122939 - 15 Jun 2019
Cited by 44 | Viewed by 4982
Abstract
Long non-coding RNAs (lncRNAs) are classified as a group of transcripts which regulate various biological processes, such as RNA processing, epigenetic control, and signaling pathways. According to recent studies, lncRNAs are dysregulated in cancer and play an important role in cancer incidence and [...] Read more.
Long non-coding RNAs (lncRNAs) are classified as a group of transcripts which regulate various biological processes, such as RNA processing, epigenetic control, and signaling pathways. According to recent studies, lncRNAs are dysregulated in cancer and play an important role in cancer incidence and spreading. There is also an association between lncRNAs and the overexpression of some tumor-associated proteins, including carbonic anhydrases II, IX, and XII (CA II, CA IX, and CA XII). Therefore, not only CA inhibition, but also lncRNA modulation, could represent an attractive strategy for cancer prevention and therapy. Experimental studies have suggested that herbal compounds regulate the expression of many lncRNAs involved in cancer, such as HOTAIR (HOX transcript antisense RNA), H19, MALAT1 (metastasis-associated lung adenocarcinoma transcript 1), PCGEM1 (Prostate cancer gene expression marker 1), PVT1, etc. These plant-derived drugs or phytochemicals include resveratrol, curcumin, genistein, quercetin, epigallocatechin-3-galate, camptothcin, and 3,3′-diindolylmethane. More comprehensive information about lncRNA modulation via phytochemicals would be helpful for the administration of new herbal derivatives in cancer therapy. In this review, we describe the state-of-the-art and potential of phytochemicals as modulators of lncRNAs in different types of cancers. Full article
(This article belongs to the Special Issue Carbonic Anhydrases: A Superfamily of Ubiquitous Enzymes)
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